XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 5NH9 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5NH9_XYP_A_504 | 41% | 54% | 0.161 | 0.877 | 0.68 | 1.07 | - | - | 0 | 0 | 100% | 1 |
| 5NH9_XYP_D_501 | 35% | 17% | 0.152 | 0.839 | 1.02 | 2.51 | - | 4 | 0 | 0 | 100% | 1 |
| 5NH9_XYP_D_505 | 28% | 23% | 0.235 | 0.887 | 1.25 | 1.88 | 1 | 6 | 1 | 0 | 100% | 1 |
| 5NH9_XYP_A_506 | 25% | 26% | 0.201 | 0.833 | 1.1 | 1.9 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5NH9_XYP_C_501 | 20% | 20% | 0.233 | 0.838 | 1.1 | 2.27 | 1 | 3 | 1 | 0 | 100% | 1 |
| 5NH9_XYP_A_505 | 19% | 31% | 0.214 | 0.809 | 0.87 | 1.86 | - | 3 | 0 | 0 | 100% | 1 |
| 5NH9_XYP_B_504 | 18% | 25% | 0.239 | 0.823 | 1.15 | 1.89 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5NH9_XYP_B_505 | 8% | 23% | 0.257 | 0.722 | 0.97 | 2.15 | - | 5 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_A_504 | 27% | 54% | 0.216 | 0.861 | 0.58 | 1.18 | - | 1 | 0 | 0 | 100% | 1 |
| 8Y00_XYP_D_201 | 99% | 28% | 0.032 | 0.986 | 0.63 | 2.19 | - | 7 | 1 | 0 | 90% | 1 |
| 2WYS_XYP_A_1001 | 99% | 38% | 0.052 | 0.983 | 0.69 | 1.7 | - | 4 | 3 | 0 | 100% | 1 |
| 1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 1 |
| 1FHD_XYP_A_601 | 96% | 72% | 0.042 | 0.97 | 0.68 | 0.41 | - | - | 0 | 0 | 90% | 1 |
| 3C6Q_XYP_C_500 | 92% | 30% | 0.082 | 0.972 | 1.82 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
