5Y3L | pdb_00005y3l


NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5Y3L designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5Y3L_NAG_A_1008 88% 50% 0.092 0.9680.43 1.47 - 300100%1
5Y3L_NAG_B_1008 78% 57% 0.115 0.9570.34 1.3 - 100100%1
5Y3L_NAG_A_1009 75% 56% 0.134 0.9670.49 1.19 - 200100%1
5Y3L_NAG_B_1009 71% 62% 0.145 0.9650.37 1.07 - 100100%1
5Y3L_NAG_B_1004 61% 55% 0.166 0.9540.34 1.35 - 200100%1
5Y3L_NAG_A_1006 57% 58% 0.128 0.9040.45 1.16 - 300100%1
5Y3L_NAG_A_1004 53% 48% 0.178 0.9390.45 1.51 - 400100%1
5Y3L_NAG_B_1007 49% 46% 0.175 0.9240.53 1.54 - 300100%1
5Y3L_NAG_B_1006 49% 62% 0.151 0.8990.5 0.96 - -00100%1
5Y3L_NAG_A_1007 37% 33% 0.193 0.8920.74 1.87 - 700100%1
5Y3L_NAG_B_1003 37% 50% 0.221 0.920.44 1.48 - 300100%1
5Y3L_NAG_B_1005 23% 44% 0.247 0.8720.74 1.42 - 100100%1
5Y3L_NAG_A_1003 14% 41% 0.251 0.8010.91 1.36 1 300100%1
5Y3L_NAG_A_1005 13% 26% 0.264 0.8080.73 2.21 - 200100%1
5Y3L_NAG_B_1010 11% 24% 0.349 0.8640.77 2.28 - 500100%1
5Y3L_NAG_A_1010 3% 14% 0.435 0.7671.13 2.66 1 700100%1
3WPD_NAG_A_907 92% 55% 0.061 0.9520.54 1.2 - 100100%1
5Y3J_NAG_B_1009 91% 43% 0.08 0.9660.57 1.61 - 400100%1
3WPC_NAG_B_902 81% 48% 0.082 0.9320.71 1.3 1 200100%1
3WPB_NAG_A_902 78% 27% 0.085 0.9260.42 2.45 - 310100%1
5Y3K_NAG_B_1008 72% 63% 0.127 0.9510.32 1.06 - 200100%1
3H0C_NAG_A_794 100% 56% 0.021 0.9950.61 1.08 - 100100%1
5F9W_NAG_A_510 100% 88% 0.023 0.9940.24 0.43 - -00100%1
5LDS_NAG_B_1007 100% 67% 0.022 0.9950.48 0.79 - -00100%1
5O5D_NAG_A_601 100% 65% 0.022 0.9940.32 0.99 - 100100%1
6MUG_NAG_G_629 100% 76% 0.022 0.9940.35 0.58 - -00100%1