GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 6Y4N designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 6Y4N_GDP_B_1001 | 64% | 67% | 0.186 | 0.986 | 0.7 | 0.58 | 1 | - | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9F07_GDP_F_501 | 100% | 59% | 0.042 | 0.986 | 0.78 | 0.79 | - | 1 | 1 | 0 | 100% | 1 |
| 5JCB_GDP_B_501 | 100% | 35% | 0.044 | 0.987 | 1.25 | 1.33 | 3 | 3 | 0 | 0 | 100% | 1 |
| 6QTN_GDP_B_501 | 99% | 47% | 0.048 | 0.984 | 0.94 | 1.11 | 2 | 3 | 0 | 0 | 100% | 1 |
| 8YRK_GDP_B_501 | 98% | 50% | 0.056 | 0.98 | 0.95 | 0.98 | 1 | 2 | 0 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C41_GDP_A_202 | 100% | 52% | 0.023 | 0.996 | 1 | 0.86 | 2 | 1 | 0 | 0 | 100% | 1 |
| 9C43_GDP_A_202 | 100% | 52% | 0.018 | 0.997 | 1.1 | 0.76 | 2 | - | 1 | 0 | 100% | 1 |
| 9C40_GDP_A_202 | 100% | 42% | 0.027 | 0.995 | 1 | 1.24 | 1 | 3 | 1 | 0 | 100% | 1 |
