9RC

5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine

Created:	2018-06-28
Last modified:	2020-06-05

Find Related PDB Entry
1 entries where 9RC is found as a standalone ligand

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	48
Chiral Atom Count	3
Bond Count	50
Aromatic Bond Count	6

2D diagram of 9RC

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine
Synonyms	PNP-TMP
Systematic Name (OpenEye OEToolkits)	[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl (4-nitrophenyl) hydrogen phosphate
Formula	C₁₆ H₁₈ N₃ O₁₀ P
Molecular Weight	443.302
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=C1NC(=O)C(C)=CN1C2CC(O)C(O2)COP(Oc3ccc([N+]([O-])=O)cc3)(=O)O
SMILES	CACTVS	3.385	CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)Oc3ccc(cc3)[N+]([O-])=O)O2)C(=O)NC1=O
SMILES	OpenEye OEToolkits	2.0.6	CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)Oc3ccc(cc3)[N+](=O)[O-])O
Canonical SMILES	CACTVS	3.385	CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)Oc3ccc(cc3)[N+]([O-])=O)O2)C(=O)NC1=O
Canonical SMILES	OpenEye OEToolkits	2.0.6	CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)Oc3ccc(cc3)[N+](=O)[O-])O
InChI	InChI	1.03	InChI=1S/C16H18N3O10P/c1-9-7-18(16(22)17-15(9)21)14-6-12(20)13(28-14)8-27-30(25,26)29-11-4-2-10(3-5-11)19(23)24/h2-5,7,12-14,20H,6,8H2,1H3,(H,25,26)(H,17,21,22)/t12-,13+,14+/m0/s1
InChIKey	InChI	1.03	RWOAVOYBVRQNIZ-BFHYXJOUSA-N

Related Resource References

Resource Name	Reference
PubChem	164953
ChEMBL	CHEMBL596169
ChEBI	CHEBI:74144

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.