A1IXN

2-oxidanylidene-~{N}-[3-(4-phenylpiperazin-1-yl)propyl]-6-pyridin-3-yl-3~{H}-benzimidazole-1-carboxamide

Created:	2024-12-26
Last modified:	2025-07-23

Find Related PDB Entry
1 entries where A1IXN is found as a standalone ligand

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	62
Chiral Atom Count	0
Bond Count	66
Aromatic Bond Count	18

2D diagram of A1IXN

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	2-oxidanylidene-~{N}-[3-(4-phenylpiperazin-1-yl)propyl]-6-pyridin-3-yl-3~{H}-benzimidazole-1-carboxamide
Systematic Name (OpenEye OEToolkits)	2-oxidanylidene-~{N}-[3-(4-phenylpiperazin-1-yl)propyl]-6-pyridin-3-yl-3~{H}-benzimidazole-1-carboxamide
Formula	C₂₆ H₂₈ N₆ O₂
Molecular Weight	456.54
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	CACTVS	3.385	O=C(NCCCN1CCN(CC1)c2ccccc2)N3C(=O)Nc4ccc(cc34)c5cccnc5
SMILES	OpenEye OEToolkits	2.0.7	c1ccc(cc1)N2CCN(CC2)CCCNC(=O)N3c4cc(ccc4NC3=O)c5cccnc5
Canonical SMILES	CACTVS	3.385	O=C(NCCCN1CCN(CC1)c2ccccc2)N3C(=O)Nc4ccc(cc34)c5cccnc5
Canonical SMILES	OpenEye OEToolkits	2.0.7	c1ccc(cc1)N2CCN(CC2)CCCNC(=O)N3c4cc(ccc4NC3=O)c5cccnc5
InChI	InChI	1.06	InChI=1S/C26H28N6O2/c33-25(28-12-5-13-30-14-16-31(17-15-30)22-7-2-1-3-8-22)32-24-18-20(21-6-4-11-27-19-21)9-10-23(24)29-26(32)34/h1-4,6-11,18-19H,5,12-17H2,(H,28,33)(H,29,34)
InChIKey	InChI	1.06	YMOXHFNCFJKODZ-UHFFFAOYSA-N

Related Resource References

Resource Name	Reference
PubChem	176468780

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.