MCY

5-METHYL-2'-DEOXYCYTIDINE

Created:	2000-06-01
Last modified:	2011-06-04

Find Related PDB Entry
1 entries where MCY is found as a standalone ligand10 entries where MCY is found in a polymer sequence

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	32
Chiral Atom Count	3
Bond Count	33
Aromatic Bond Count	0

2D diagram of MCY

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	5-METHYL-2'-DEOXYCYTIDINE
Systematic Name (OpenEye OEToolkits)	4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidin-2-one
Formula	C₁₀ H₁₅ N₃ O₄
Molecular Weight	241.244
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=C1N=C(N)C(=CN1C2OC(C(O)C2)CO)C
SMILES	CACTVS	3.341	CC1=CN([CH]2C[CH](O)[CH](CO)O2)C(=O)N=C1N
SMILES	OpenEye OEToolkits	1.5.0	CC1=CN(C(=O)N=C1N)C2CC(C(O2)CO)O
Canonical SMILES	CACTVS	3.341	CC1=CN([C@H]2C[C@H](O)[C@@H](CO)O2)C(=O)N=C1N
Canonical SMILES	OpenEye OEToolkits	1.5.0	CC1=CN(C(=O)N=C1N)[C@H]2C[C@@H]([C@H](O2)CO)O
InChI	InChI	1.03	InChI=1S/C10H15N3O4/c1-5-3-13(10(16)12-9(5)11)8-2-6(15)7(4-14)17-8/h3,6-8,14-15H,2,4H2,1H3,(H2,11,12,16)/t6-,7+,8+/m0/s1
InChIKey	InChI	1.03	LUCHPKXVUGJYGU-XLPZGREQSA-N

Related Resource References

Resource Name	Reference
PubChem	440055
ChEMBL	CHEMBL1234242
ChEBI	CHEBI:47876
CCDC/CSD	GERGAL

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.