PRD_002397

macrocycle inhibitor NDM1i-1F

Created:2020-06-08
Last modified:  2025-02-04

PRD_002397 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 6XBE.

Chemical Details

Formal Charge0
Atom Count138
Chiral Atom Count8
Bond Count140
Aromatic Bond Count0
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Chemical Component Summary

Namemacrocycle inhibitor NDM1i-1F
Systematic Name (OpenEye OEToolkits)[[3-[(3~{S},6~{S},12~{S},15~{S},18~{R},21~{R},24~{S},27~{S})-18-[3-[[azaniumylidene(azanyl)methyl]amino]propyl]-24-(3-hydroxy-3-oxopropyl)-15-(2-methylpropyl)-2,5,11,14,17,20,23,26-octakis(oxidanylidene)-3-propan-2-yl-12-(sulfanylmethyl)-1,4,10,13,16,19,22,25-octazatricyclo[25.3.0.0^{6,10}]triacontan-21-yl]propylamino]-azanyl-methylidene]azanium
FormulaC41 H72 N14 O10 S
Molecular Weight953.163
TypePEPTIDE-LIKE

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESCACTVS3.385CC(C)C[CH]1NC(=O)[CH](CCCNC(N)=[NH2+])NC(=O)[CH](CCCNC(N)=[NH2+])NC(=O)[CH](CCC(O)=O)NC(=O)[CH]2CCCN2C(=O)[CH](NC(=O)[CH]3CCCN3C(=O)[CH](CS)NC1=O)C(C)C
SMILESOpenEye OEToolkits2.0.7CC(C)CC1C(=O)NC(C(=O)N2CCCC2C(=O)NC(C(=O)N3CCCC3C(=O)NC(C(=O)NC(C(=O)NC(C(=O)N1)CCCNC(=[NH2+])N)CCCNC(=[NH2+])N)CCC(=O)O)C(C)C)CS
Canonical SMILESCACTVS3.385 CC(C)C[C@@H]1NC(=O)[C@@H](CCCNC(N)=[NH2+])NC(=O)[C@@H](CCCNC(N)=[NH2+])NC(=O)[C@H](CCC(O)=O)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](NC(=O)[C@@H]3CCCN3C(=O)[C@@H](CS)NC1=O)C(C)C
Canonical SMILESOpenEye OEToolkits2.0.7 CC(C)C[C@H]1C(=O)N[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@H](C(=O)N3CCC[C@H]3C(=O)N[C@H](C(=O)N[C@@H](C(=O)N[C@@H](C(=O)N1)CCCNC(=[NH2+])N)CCCNC(=[NH2+])N)CCC(=O)O)C(C)C)CS
InChIInChI1.06 InChI=1S/C41H70N14O10S/c1-21(2)19-26-35(61)52-27(20-66)38(64)54-17-7-12-29(54)37(63)53-31(22(3)4)39(65)55-18-8-11-28(55)36(62)50-25(13-14-30(56)57)34(60)49-23(9-5-15-46-40(42)43)32(58)48-24(33(59)51-26)10-6-16-47-41(44)45/h21-29,31,66H,5-20H2,1-4H3,(H,48,58)(H,49,60)(H,50,62)(H,51,59)(H,52,61)(H,53,63)(H,56,57)(H4,42,43,46)(H4,44,45,47)/p+2/t23-,24-,25+,26+,27-,28+,29+,31+/m1/s1
InChIKeyInChI1.06 VMBOYKBZYQWMQZ-FUAOVUQBSA-P