PRD_002399

Macrocycle NDM1i-3D

Created:2020-06-09
Last modified:  2025-02-04

PRD_002399 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 6XCI.

Chemical Details

Formal Charge0
Atom Count135
Chiral Atom Count9
Bond Count139
Aromatic Bond Count6
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Chemical Component Summary

NameMacrocycle NDM1i-3D
FormulaC45 H68 N10 O11 S
Molecular Weight957.147
TypePEPTIDE-LIKE

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESCACTVS3.385CCCC[CH]1NC(=O)[CH](CCCCN)NC(=O)[CH]2CCCN2C(=O)[CH](CCC(O)=O)NC(=O)[CH]3C[CH](O)CN3C(=O)[CH](Cc4ccccc4CN)NC(=O)[CH]5CCCN5C(=O)[CH](CS)NC1=O
SMILESOpenEye OEToolkits2.0.7CCCCC1C(=O)NC(C(=O)N2CCCC2C(=O)NC(C(=O)N3CC(CC3C(=O)NC(C(=O)N4CCCC4C(=O)NC(C(=O)N1)CCCCN)CCC(=O)O)O)Cc5ccccc5CN)CS
Canonical SMILESCACTVS3.385 CCCC[C@@H]1NC(=O)[C@@H](CCCCN)NC(=O)[C@H]2CCCN2C(=O)[C@H](CCC(O)=O)NC(=O)[C@@H]3C[C@@H](O)CN3C(=O)[C@H](Cc4ccccc4CN)NC(=O)[C@@H]5CCCN5C(=O)[C@@H](CS)NC1=O
Canonical SMILESOpenEye OEToolkits2.0.7 CCCC[C@H]1C(=O)N[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@H](C(=O)N3C[C@@H](C[C@H]3C(=O)N[C@H](C(=O)N4CCC[C@@H]4C(=O)N[C@@H](C(=O)N1)CCCCN)CCC(=O)O)O)Cc5ccccc5CN)CS
InChIInChI1.06 InChI=1S/C45H68N10O11S/c1-2-3-12-29-39(60)52-33(25-67)45(66)54-20-9-15-35(54)41(62)51-32(21-26-10-4-5-11-27(26)23-47)44(65)55-24-28(56)22-36(55)42(63)50-31(16-17-37(57)58)43(64)53-19-8-14-34(53)40(61)49-30(38(59)48-29)13-6-7-18-46/h4-5,10-11,28-36,56,67H,2-3,6-9,12-25,46-47H2,1H3,(H,48,59)(H,49,61)(H,50,63)(H,51,62)(H,52,60)(H,57,58)/t28-,29+,30-,31+,32+,33-,34-,35+,36+/m1/s1
InChIKeyInChI1.06 DLSVEFWZIJIQNU-VXMZCOAMSA-N

Related Resource References

Resource NameReference
PubChem 155819218