1OU6 | pdb_00001ou6

Biosynthetic thiolase from Zoogloea ramigera in complex with acetyl-O-pantetheine-11-pivalate

• PDB DOI: https://doi.org/10.2210/pdb1OU6/pdb

• Classification: TRANSFERASE
• Organism(s): Zoogloea ramigera
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2003-03-24 Released: 2004-06-01 
• Deposition Author(s): Kursula, P., Schmitz, W., Wierenga, R.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.07 Å
• R-Value Free: 
  0.212 (Depositor), 0.218 (DCC) 
• R-Value Work: 
  0.161 (Depositor), 0.171 (DCC) 
• R-Value Observed: 
  0.163 (Depositor) 

Literature

The surprising binding mode of a coenzyme A analogue, O-pantetheine-11-pivalate, in the catalytic cavity of bacterial biosynthetic thiolase

Kursula, P., Schmitz, W., Wierenga, R.K.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 163.39 kDa 
• Atom Count: 12,967 
• Modeled Residue Count: 1,568 
• Deposited Residue Count: 1,568 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA acetyltransferase	A, B, C, D	392	Zoogloea ramigera	Mutation(s): 1  EC: 2.3.1.9
UniProt
Find proteins for P07097 (Shinella zoogloeoides) Explore P07097  Go to UniProtKB:  P07097

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
168	G [auth A], J [auth B]	PANTOTHENYL-AMINOETHANOL-ACETATE PIVALIC ACID C18 H32 N2 O7 MILJVOHYMMUVQM-AWEZNQCLSA-N
SO4	E [auth A], F [auth A], H [auth B], I [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSO	A, B, C, D	L-PEPTIDE LINKING	C3 H7 N O3 S		CYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.07 Å
• R-Value Free:  0.212 (Depositor), 0.218 (DCC) 
• R-Value Work:  0.161 (Depositor), 0.171 (DCC) 
• R-Value Observed: 0.163 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.38	α = 90
b = 78.95	β = 92.96
c = 148.82	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
XDS	data reduction
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-06-01 
Deposition Author(s): Kursula, P., Schmitz, W., Wierenga, R.K.

Revision History  

• Version 1.0: 2004-06-01
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary