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 29IZ | pdb_000029iz

Dormant 80S:eEF2:SERBP1:tRNA complex from human cells treated with toxin NT-2

  • Classification: RIBOSOME
  • Organism(s): Homo sapiens
  • Mutation(s): Yes 

  • Deposited: 2026-03-16 Released: 2026-09-30 
  • Deposition Author(s): Rabl, J., Karousis, E.D.
  • Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.08 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history. 

Literature

A human cell-free translation screen identifies the NT-2 mycotoxin as a ribosomal inhibitor that binds the peptidyl transferase center.

Schwaller, N., Andenmatten, D., Luginbuhl, J., Rabl, J., Baur, H., Chambon, M., Vesin, J., Turcatti, G., Karousis, E.D.

(2026) Commun Biol 9

  • DOI: https://doi.org/10.1038/s42003-026-10743-6
  • Primary Citation Related Structures: 
    29IW, 29IX, 29IY, 29IZ

  • PubMed Abstract: 

    Translation inhibitors are invaluable for probing ribosome function and therapeutic applications, but systematic discovery in human systems is limited by the lack of scalable, screening-compatible cell-free platforms. Here, we establish a robust high-throughput screening using human lysates that bypasses cellular cytotoxic effects. After screening ~28,000 small molecules, we identified known and a novel translation inhibitor, including NT-2, a trichothecene mycotoxin produced by the pathogenic Fusarium sporotrichioides. NT-2 suppressed protein synthesis in human cells and yeast lysates, while sparing translation in bacteria and intact yeast cells. Cryo-EM at 1.76 Å revealed NT-2 bound at the peptidyl transferase center of the human 60S ribosome. In addition, cryoEM classification of NT-2 treated cells shows ribosomes in an inactive eEF2/SERBP1-bound dormant state. Together, these results expose NT-2 as a previously unrecognized environmental inhibitor of mammalian protein synthesis and demonstrate the power of cell-free translation screening to reveal new inhibitors with unexpected ribosome fates.


  • Organizational Affiliation: 
    • Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 3,958.13 kDa 
  • Atom Count: 214,840 
  • Modeled Residue Count: 17,455 
  • Deposited Residue Count: 21,232 
  • Unique protein chains: 77
  • Unique nucleic acid chains: 5

Macromolecules


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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL30A [auth AA]248Homo sapiensMutation(s): 0 
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Find proteins for P18124 (Homo sapiens)
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GTEx:  ENSG00000147604 
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UniProt GroupP18124
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aB [auth AB]266Homo sapiensMutation(s): 0 
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Find proteins for P62424 (Homo sapiens)
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PHAROS:  P62424
GTEx:  ENSG00000148303 
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L9C [auth AC]192Homo sapiensMutation(s): 0 
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Find proteins for P32969 (Homo sapiens)
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GTEx:  ENSG00000163682 
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UniProt GroupP32969
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Ribosomal protein uL16-likeD [auth AD]214Homo sapiensMutation(s): 0 
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Find proteins for Q96L21 (Homo sapiens)
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GTEx:  ENSG00000165496 
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UniProt GroupQ96L21
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L11E [auth AE]178Homo sapiensMutation(s): 0 
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Find proteins for P62913 (Homo sapiens)
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GTEx:  ENSG00000142676 
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UniProt GroupP62913
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L13F [auth AF]211Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000167526 
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UniProt GroupP26373
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L14G [auth AG]215Homo sapiensMutation(s): 0 
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PHAROS:  P50914
GTEx:  ENSG00000188846 
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UniProt GroupP50914
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L15H [auth AH]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174748 
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L13aI [auth AI]203Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142541 
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L17J [auth AJ]184Homo sapiensMutation(s): 0 
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PHAROS:  P18621
GTEx:  ENSG00000265681 
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L18K [auth AK]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000063177 
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L19L [auth AL]196Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108298 
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aM [auth AM]176Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105640 
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L21N [auth AN]160Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000122026 
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L22O [auth AO]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000116251 
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L23P [auth AP]140Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000125691 
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L24Q [auth AQ]157Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114391 
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L23aR [auth AR]156Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198242 
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L26S [auth AS]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161970 
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L27T [auth AT]136Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000131469 
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL15U [auth AU]148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166441 
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L29V [auth AV]159Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000162244 
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L30W [auth AW]115Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000156482 
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L31X [auth AX]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000071082 
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L32Y [auth AY]135Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000144713 
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL33Z [auth AZ]110Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182899 
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L34AA [auth Aa]117Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000109475 
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L35BA [auth Ab]123Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136942 
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L36CA [auth Ac]105Homo sapiensMutation(s): 0 
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PHAROS:  Q9Y3U8
GTEx:  ENSG00000130255 
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL37DA [auth Ad]97Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145592 
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L38EA [auth Ae]70Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172809 
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L39FA [auth Af]51Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198918 
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL40GA [auth Ag]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000221983 
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Entity ID: 34
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L36aHA [auth Ah]106Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000241343 
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aIA [auth Ai]92Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197756 
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L28JA [auth Aj]137Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108107 
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Entity ID: 40
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2NA [auth BD]257Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161016 
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3OA [auth CA]403Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100316 
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L4PA [auth CB]427Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174444 
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L5QA [auth CC]297Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000122406 
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL6RA [auth CD]288Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000089009 
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
Elongation factor 2TA [auth ER]858Homo sapiensMutation(s): 0 
EC: 3.6.5
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Go to UniProtKB:  P13639
PHAROS:  P13639
GTEx:  ENSG00000167658 
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
Plasminogen activator inhibitor 1 RNA-binding proteinUA [auth GF]408Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142864 
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
60S ribosomal protein L41VA [auth Hi]25Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000229117 
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Entity ID: 50
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aXA [auth HC]264Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145425 
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Entity ID: 51
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS4, X isoformYA [auth HF]263Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198034 
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Entity ID: 52
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S7ZA [auth HI]194Homo sapiensMutation(s): 0 
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PHAROS:  P62081
GTEx:  ENSG00000171863 
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Entity ID: 53
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S8AB [auth HJ]208Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142937 
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Entity ID: 54
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17BB [auth HM]158Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142534 
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Entity ID: 55
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S17CB [auth HS]135Homo sapiensMutation(s): 0 
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PHAROS:  P08708
GTEx:  ENSG00000182774 
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Entity ID: 56
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21DB [auth A]84Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000171858 
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Entity ID: 57
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12EB [auth HY]143Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186468 
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Entity ID: 58
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S26FB [auth Hb]115Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197728 
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Entity ID: 59
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S2GB [auth HD]293Homo sapiensMutation(s): 0 
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PHAROS:  P15880
GTEx:  ENSG00000140988 
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Entity ID: 60
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S6HB [auth HH]249Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137154 
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Entity ID: 61
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S9IB [auth HK]194Homo sapiensMutation(s): 0 
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PHAROS:  P46781
GTEx:  ENSG00000170889 
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Entity ID: 62
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S13JB [auth HO]151Homo sapiensMutation(s): 0 
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PHAROS:  P62277
GTEx:  ENSG00000110700 
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Entity ID: 63
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S14KB [auth HP]151Homo sapiensMutation(s): 0 
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PHAROS:  P62263
GTEx:  ENSG00000164587 
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Entity ID: 64
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S15aLB [auth HX]130Homo sapiensMutation(s): 0 
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PHAROS:  P62244
GTEx:  ENSG00000134419 
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Entity ID: 65
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S24MB [auth HZ]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000138326 
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Entity ID: 66
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S27NB [auth Hc]84Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000177954 
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Entity ID: 67
MoleculeChains  Sequence LengthOrganismDetailsImage
Ubiquitin-like FUBI-ribosomal protein eS30 fusion proteinOB [auth Hf]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000149806 
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Entity ID: 68
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2PB [auth B]207Homo sapiensMutation(s): 1 
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PHAROS:  P08865
GTEx:  ENSG00000168028 
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Entity ID: 69
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S3QB [auth HE]243Homo sapiensMutation(s): 0 
EC: 4.2.99.18
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GTEx:  ENSG00000149273 
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Entity ID: 70
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S5RB [auth HG]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000083845 
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Entity ID: 71
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S10SB [auth HL]165Homo sapiensMutation(s): 0 
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PHAROS:  P46783
GTEx:  ENSG00000124614 
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Entity ID: 72
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S15TB [auth HQ]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000115268 
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Entity ID: 73
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S16UB [auth HR]146Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105193 
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Entity ID: 74
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S18VB [auth HT]152Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000231500 
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Entity ID: 75
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S19WB [auth HU]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105372 
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Entity ID: 76
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S20XB [auth HV]119Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000008988 
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Entity ID: 77
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S28YB [auth Hd]69Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000233927 
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Entity ID: 78
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S29ZB [auth He]56Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000213741 
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Entity ID: 79
MoleculeChains  Sequence LengthOrganismDetailsImage
40S ribosomal protein S12AC [auth HN]132Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112306 
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Entity ID: 80
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS25BC [auth Ha]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000118181 
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Entity ID: 81
MoleculeChains  Sequence LengthOrganismDetailsImage
UbiquitinCC [auth Hg]156Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143947 
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Entity ID: 82
MoleculeChains  Sequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1DC [auth Hh]317Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204628 
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UniProt GroupP63244
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Entity ID: 37
MoleculeChains LengthOrganismImage
28S rRNAKA [auth BA]5,069Homo sapiens
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Entity ID: 38
MoleculeChains LengthOrganismImage
5S rRNALA [auth BB]120Homo sapiens
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Entity ID: 39
MoleculeChains LengthOrganismImage
5.8S rRNAMA [auth BC]157Homo sapiens
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Entity ID: 45
MoleculeChains LengthOrganismImage
tRNASA [auth DA]77Homo sapiens
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Entity ID: 49
MoleculeChains LengthOrganismImage
18S rRNAWA [auth HA]1,868Homo sapiens
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Small Molecules

Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1JQ4
(Subject of Investigation/LOI)

Query on A1JQ4



Download:Ideal Coordinates CCD File
EL [auth BA]Toxin NT-2
C17 H24 O7
CSYVMZMEBKUDRQ-BNWDXEGFSA-N
SPM

Query on SPM



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BD [auth BA],
CD [auth BA],
DD [auth BA],
ED [auth BA],
FD [auth BA]
SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
SPD

Query on SPD



Download:Ideal Coordinates CCD File
AD [auth BA]
VC [auth BA]
WC [auth BA]
XC [auth BA]
YC [auth BA]
AD [auth BA],
VC [auth BA],
WC [auth BA],
XC [auth BA],
YC [auth BA],
ZC [auth BA]
SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
PUT

Query on PUT



Download:Ideal Coordinates CCD File
FC [auth AH],
FL [auth BB],
TC [auth BA],
UC [auth BA]
1,4-DIAMINOBUTANE
C4 H12 N2
KIDHWZJUCRJVML-UHFFFAOYSA-N
ZN

Query on ZN



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ER [auth He]
GR [auth Hg]
NC [auth Aa]
PC [auth Ad]
QC [auth Ag]
ER [auth He],
GR [auth Hg],
NC [auth Aa],
PC [auth Ad],
QC [auth Ag],
RC [auth Ah],
SC [auth Ai],
YQ [auth Hb]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K

Query on K



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AJ [auth BA]
AM [auth HA]
AO [auth HA]
AP [auth HA]
AQ [auth HA]
AJ [auth BA],
AM [auth HA],
AO [auth HA],
AP [auth HA],
AQ [auth HA],
AR [auth HP],
BG [auth BA],
BI [auth BA],
BO [auth HA],
BP [auth HA],
BR [auth HT],
CL [auth BA],
CN [auth HA],
CP [auth HA],
CR [auth HT],
DE [auth BA],
DM [auth HA],
DO [auth HA],
DR [auth HV],
EE [auth BA],
EG [auth BA],
EN [auth HA],
EO [auth HA],
FJ [auth BA],
FK [auth BA],
FO [auth HA],
FP [auth HA],
FR [auth He],
GN [auth HA],
GO [auth HA],
GQ [auth HA],
HC [auth AM],
HK [auth BA],
HO [auth HA],
HQ [auth HA],
IC [auth AN],
IE [auth BA],
IL [auth BC],
IO [auth HA],
IQ [auth HA],
JG [auth BA],
JH [auth BA],
JK [auth BA],
JO [auth HA],
JP [auth HA],
JQ [auth HA],
KC [auth AP],
KG [auth BA],
KI [auth BA],
KK [auth BA],
KM [auth HA],
KN [auth HA],
KO [auth HA],
LD [auth BA],
LI [auth BA],
LO [auth HA],
LP [auth HA],
MG [auth BA],
MJ [auth BA],
ML [auth BD],
MO [auth HA],
MQ [auth HA],
NH [auth BA],
NL [auth BD],
NO [auth HA],
OE [auth BA],
OG [auth BA],
OI [auth BA],
OM [auth HA],
OP [auth HA],
OQ [auth HA],
PG [auth BA],
PL [auth HA],
PM [auth HA],
PQ [auth HA],
QM [auth HA],
QN [auth HA],
RG [auth BA],
RL [auth HA],
RM [auth HA],
RO [auth HA],
RP [auth HA],
RQ [auth HA],
SO [auth HA],
SP [auth HA],
TG [auth BA],
TL [auth HA],
TN [auth HA],
UM [auth HA],
UN [auth HA],
UP [auth HA],
UQ [auth HA],
VD [auth BA],
VF [auth BA],
VK [auth BA],
VN [auth HA],
VO [auth HA],
VQ [auth HA],
WF [auth BA],
WK [auth BA],
WN [auth HA],
WO [auth HA],
WP [auth HA],
WQ [auth HF],
XK [auth BA],
XM [auth HA],
XQ [auth HJ],
YE [auth BA],
YH [auth BA],
YJ [auth BA],
YL [auth HA],
YN [auth HA],
ZK [auth BA],
ZM [auth HA],
ZN [auth HA],
ZO [auth HA],
ZP [auth HA]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
AE [auth BA]
AF [auth BA]
AG [auth BA]
AH [auth BA]
AI [auth BA]
AE [auth BA],
AF [auth BA],
AG [auth BA],
AH [auth BA],
AI [auth BA],
AK [auth BA],
AL [auth BA],
AN [auth HA],
BE [auth BA],
BF [auth BA],
BH [auth BA],
BJ [auth BA],
BK [auth BA],
BL [auth BA],
BM [auth HA],
BN [auth HA],
BQ [auth HA],
CE [auth BA],
CF [auth BA],
CG [auth BA],
CH [auth BA],
CI [auth BA],
CJ [auth BA],
CK [auth BA],
CM [auth HA],
CO [auth HA],
CQ [auth HA],
DF [auth BA],
DG [auth BA],
DH [auth BA],
DI [auth BA],
DJ [auth BA],
DK [auth BA],
DL [auth BA],
DN [auth HA],
DP [auth HA],
DQ [auth HA],
EC [auth AD],
EF [auth BA],
EH [auth BA],
EI [auth BA],
EJ [auth BA],
EK [auth BA],
EM [auth HA],
EP [auth HA],
EQ [auth HA],
FE [auth BA],
FF [auth BA],
FG [auth BA],
FH [auth BA],
FI [auth BA],
FM [auth HA],
FN [auth HA],
FQ [auth HA],
GC [auth AJ],
GD [auth BA],
GE [auth BA],
GF [auth BA],
GG [auth BA],
GH [auth BA],
GI [auth BA],
GJ [auth BA],
GK [auth BA],
GL [auth BB],
GM [auth HA],
GP [auth HA],
HD [auth BA],
HE [auth BA],
HF [auth BA],
HG [auth BA],
HH [auth BA],
HI [auth BA],
HJ [auth BA],
HL [auth BB],
HM [auth HA],
HN [auth HA],
HP [auth HA],
ID [auth BA],
IF [auth BA],
IG [auth BA],
IH [auth BA],
II [auth BA],
IJ [auth BA],
IK [auth BA],
IM [auth HA],
IN [auth HA],
IP [auth HA],
JC [auth AP],
JD [auth BA],
JE [auth BA],
JF [auth BA],
JI [auth BA],
JJ [auth BA],
JL [auth BC],
JM [auth HA],
JN [auth HA],
KD [auth BA],
KE [auth BA],
KF [auth BA],
KH [auth BA],
KJ [auth BA],
KL [auth BC],
KP [auth HA],
KQ [auth HA],
LC [auth AY],
LE [auth BA],
LF [auth BA],
LG [auth BA],
LH [auth BA],
LJ [auth BA],
LK [auth BA],
LL [auth BC],
LM [auth HA],
LN [auth HA],
LQ [auth HA],
MC [auth AZ],
MD [auth BA],
ME [auth BA],
MF [auth BA],
MH [auth BA],
MI [auth BA],
MK [auth BA],
MM [auth HA],
MN [auth HA],
MP [auth HA],
ND [auth BA],
NE [auth BA],
NF [auth BA],
NG [auth BA],
NI [auth BA],
NJ [auth BA],
NK [auth BA],
NM [auth HA],
NN [auth HA],
NP [auth HA],
NQ [auth HA],
OC [auth Ad],
OD [auth BA],
OF [auth BA],
OH [auth BA],
OJ [auth BA],
OK [auth BA],
OL [auth HA],
ON [auth HA],
OO [auth HA],
PD [auth BA],
PE [auth BA],
PF [auth BA],
PH [auth BA],
PI [auth BA],
PJ [auth BA],
PK [auth BA],
PN [auth HA],
PO [auth HA],
PP [auth HA],
QD [auth BA],
QE [auth BA],
QF [auth BA],
QG [auth BA],
QH [auth BA],
QI [auth BA],
QJ [auth BA],
QK [auth BA],
QL [auth HA],
QO [auth HA],
QP [auth HA],
QQ [auth HA],
RD [auth BA],
RE [auth BA],
RF [auth BA],
RH [auth BA],
RI [auth BA],
RJ [auth BA],
RK [auth BA],
RN [auth HA],
SD [auth BA],
SE [auth BA],
SF [auth BA],
SG [auth BA],
SH [auth BA],
SI [auth BA],
SJ [auth BA],
SK [auth BA],
SL [auth HA],
SM [auth HA],
SN [auth HA],
SQ [auth HA],
TD [auth BA],
TE [auth BA],
TF [auth BA],
TH [auth BA],
TI [auth BA],
TJ [auth BA],
TK [auth BA],
TM [auth HA],
TO [auth HA],
TP [auth HA],
TQ [auth HA],
UD [auth BA],
UE [auth BA],
UF [auth BA],
UG [auth BA],
UH [auth BA],
UI [auth BA],
UJ [auth BA],
UK [auth BA],
UL [auth HA],
UO [auth HA],
VE [auth BA],
VG [auth BA],
VH [auth BA],
VI [auth BA],
VJ [auth BA],
VL [auth HA],
VM [auth HA],
VP [auth HA],
WD [auth BA],
WE [auth BA],
WG [auth BA],
WH [auth BA],
WI [auth BA],
WJ [auth BA],
WL [auth HA],
WM [auth HA],
XD [auth BA],
XE [auth BA],
XF [auth BA],
XG [auth BA],
XH [auth BA],
XI [auth BA],
XJ [auth BA],
XL [auth HA],
XN [auth HA],
XO [auth HA],
XP [auth HA],
YD [auth BA],
YF [auth BA],
YG [auth BA],
YI [auth BA],
YK [auth BA],
YM [auth HA],
YO [auth HA],
YP [auth HA],
ZD [auth BA],
ZE [auth BA],
ZF [auth BA],
ZG [auth BA],
ZH [auth BA],
ZI [auth BA],
ZJ [auth BA],
ZL [auth HA],
ZQ [auth HH]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  4 Unique
IDChains Modified ResidueModification TypeFormula2D Diagram
V5N
Query on V5N
HISHydroxylationC6 H9 N3 O3
MLZ
Query on MLZ
LYSMethylationC7 H16 N2 O2
HIC
Query on HIC
HISMethylationC7 H11 N3 O2
HY3
Query on HY3
PROHydroxylationC5 H9 N O3

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.08 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerlandCRSK-3_220624

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-30
    Type: Initial release
  • Version 1.1: 2026-10-07
    Changes: Data collection, Database references