2DK4 | pdb_00002dk4

Solution structure of Splicing Factor Motif in Pre-mRNA splicing factor 18 (hPRP18)

• PDB DOI: https://doi.org/10.2210/pdb2DK4/pdb
• BMRB: 11355

• Classification: GENE REGULATION
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2006-04-06 Released: 2006-10-06 
• Deposition Author(s): He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations 

Literature

Solution structure of the splicing factor motif of the human Prp18 protein.

He, F., Inoue, M., Kigawa, T., Takahashi, M., Kuwasako, K., Tsuda, K., Kobayashi, N., Terada, T., Shirouzu, M., Guntert, P., Yokoyama, S., Muto, Y.

(2012) Proteins 80: 968-974

• PubMed: 22213562 
• DOI: https://doi.org/10.1002/prot.24003
• Primary Citation of Related Structures:  
  2DK4

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Organizational Affiliation: 
• RIKEN Systems and Structural Biology Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 8.39 kDa 
• Atom Count: 587 
• Modeled Residue Count: 76 
• Deposited Residue Count: 76 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-mRNA-splicing factor 18	A	76	Homo sapiens	Mutation(s): 0  Gene Names: PRPF18, HPRP18
UniProt & NIH Common Fund Data Resources
Find proteins for Q99633 (Homo sapiens) Explore Q99633  Go to UniProtKB:  Q99633
PHAROS:  Q99633 GTEx:  ENSG00000165630

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-06 
Deposition Author(s): He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-10-06
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2011-12-21
  Changes: Database references
• Version 1.4: 2019-12-25
  Changes: Data collection, Database references
• Version 1.5: 2024-05-01
  Changes: Data collection, Database references