Download MendeleyCrystal structure of the cell wall anchor domain of MotB, a stator component of the bacterial flagellar motor: implications for peptidoglycan recognition.
(2008) Proc Natl Acad Sci U S A
3CYQ | pdb_00003cyq
The crystal structure of the complex of the C-terminal domain of Helicobacter pylori MotB (residues 125-256) with N-acetylmuramic acid
- PDB DOI: https://doi.org/10.2210/pdb3CYQ/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Helicobacter pylori
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-04-26 Released: 2008-07-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.289 (Depositor), 0.290 (DCC)
- R-Value Work: 0.217 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.220 (Depositor)
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chemotaxis protein motB | 138 | Helicobacter pylori | Mutation(s): 0 Gene Names: motB |  | |
UniProt | |||||
Find proteins for P56427 (Helicobacter pylori (strain ATCC 700392 / 26695)) Explore P56427 Go to UniProtKB: P56427 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P56427 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AMU Query on AMU | Q [auth D], R [auth K] | N-acetyl-beta-muramic acid C11 H19 N O8 MNLRQHMNZILYPY-YVNCZSHWSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.289 (Depositor), 0.290 (DCC)
- R-Value Work: 0.217 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.220 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.781 | α = 90 |
| b = 110.058 | β = 104.58 |
| c = 113.664 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-07-08 Deposition Author(s): Roujeinikova, A.
Revision History (Full details and data files)
- Version 1.0: 2008-07-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Structure summary
