3NTV | pdb_00003ntv

Crystal structure of a putative caffeoyl-CoA O-methyltransferase from Staphylococcus aureus

• PDB DOI: https://doi.org/10.2210/pdb3NTV/pdb

• Classification: TRANSFERASE
• Organism(s): Staphylococcus aureus subsp. aureus MW2
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-07-05 Released: 2011-07-06 
• Deposition Author(s): Qiu, W., Lam, R., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 
  0.205 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.176 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.178 (Depositor) 

Literature

Crystal structure of a putative caffeoyl-CoA O-methyltransferase from Staphylococcus aureus

Qiu, W., Lam, R., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 54.3 kDa 
• Atom Count: 3,838 
• Modeled Residue Count: 420 
• Deposited Residue Count: 464 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MW1564 protein	A, B	232	Staphylococcus aureus subsp. aureus MW2	Mutation(s): 0  Gene Names: MW1564 EC: 2.1.1.104

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free:  0.205 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.176 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.178 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.383	α = 90
b = 65.441	β = 90.9
c = 70.468	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHARP	phasing
BUSTER	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-07-06 
Deposition Author(s): Qiu, W., Lam, R., Romanov, V., Jones, K., Pai, E.F., Chirgadze, N.Y.

Revision History  

• Version 1.0: 2011-07-06
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-12-27
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-10-09
  Changes: Structure summary