5XBV | pdb_00005xbv

Crystal structure of Wss1 mutant from saccharomyces cerevisiae

PDB DOI: https://doi.org/10.2210/pdb5XBV/pdb

Classification: HYDROLASE
Organism(s): Saccharomyces cerevisiae FostersO
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2017-03-21 Released: 2018-03-28
Deposition Author(s): Dong, Y.H., Yang, X.Y., Wang, W.J.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.200 (Depositor), 0.200 (DCC)
R-Value Work:
0.173 (Depositor), 0.170 (DCC)
R-Value Observed:
0.174 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

crystal structure of Wss1 mutant from saccharomyces cerevisiae

Dong, Y.H., Yang, X.Y., Wang, W.J.

To be published.

Macromolecule Content

Total Structure Weight: 17.51 kDa
Atom Count: 1,196
Modeled Residue Count: 126
Deposited Residue Count: 149
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Wss1p	A	149	Saccharomyces cerevisiae FostersO	Mutation(s): 1 Gene Names: FOSTERSO_2154
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.200 (Depositor), 0.200 (DCC)
R-Value Work: 0.173 (Depositor), 0.170 (DCC)
R-Value Observed: 0.174 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.202	α = 90
b = 86.202	β = 90
c = 36.287	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2018-03-28

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31600597

Revision History (Full details and data files)

Version 1.0: 2018-03-28
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.