6SWJ | pdb_00006swj

The kinase domain of GanS, a histidine kinase from Geobacillus stearothermophilus (with Pt)

• PDB DOI: https://doi.org/10.2210/pdb6SWJ/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Geobacillus stearothermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-09-22 Released: 2020-10-14 
• Deposition Author(s): Lansky, S., Shiradski, M., Lavid, N., Shoham, Y., Shoham, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.76 Å
• R-Value Free: 
  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.202 (Depositor) 

Literature

The kinase domain of GanS, a histidine kinase from Geobacillus stearothermophilus (with Pt)

Lansky, S., Shiradski, M., Lavid, N., Shoham, Y., Shoham, G.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology

Macromolecule Content 

• Total Structure Weight: 25.47 kDa 
• Atom Count: 1,815 
• Modeled Residue Count: 205 
• Deposited Residue Count: 218 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histidine kinase	A	218	Geobacillus stearothermophilus	Mutation(s): 0  Gene Names: GT94_12015 EC: 2.7.13.3
UniProt
Find proteins for W8QF84 (Geobacillus stearothermophilus) Explore W8QF84  Go to UniProtKB:  W8QF84

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PT	B [auth A], C [auth A], D [auth A], E [auth A]	PLATINUM (II) ION Pt HRGDZIGMBDGFTC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.76 Å
• R-Value Free:  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.202 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.83	α = 90
b = 80.28	β = 90
c = 116.36	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-10-14 
Deposition Author(s): Lansky, S., Shiradski, M., Lavid, N., Shoham, Y., Shoham, G.

Revision History  

• Version 1.0: 2020-10-14
  Type: Initial release
  
• Version 1.1: 2024-05-15
  Changes: Data collection, Database references