7C9Q | pdb_00007c9q

Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP

PDB DOI: https://doi.org/10.2210/pdb7C9Q/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-06-07 Released: 2021-06-09
Deposition Author(s): Huang, Y., Li, R., Wan, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.88 Å
R-Value Free:
0.219 (Depositor), 0.220 (DCC)
R-Value Work:
0.181 (Depositor), 0.180 (DCC)
R-Value Observed:
0.183 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP

Huang, Y., Li, R., Wan, J.

To be published.

Macromolecule Content

Total Structure Weight: 148.92 kDa
Atom Count: 10,738
Modeled Residue Count: 1,295
Deposited Residue Count: 1,352
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-1,6-bisphosphatase 1	A, B [auth C], C [auth D], D [auth B]	338	Homo sapiens	Mutation(s): 1 Gene Names: FBP1, FBP EC: 3.1.3.11
UniProt & NIH Common Fund Data Resources
Find proteins for P09467 (Homo sapiens) Explore P09467 Go to UniProtKB: P09467
PHAROS: P09467 GTEx: ENSG00000165140
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P09467
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AMP Query on AMP Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain I [auth D] SDF format, chain K [auth B] SDF format, chain G [auth C] MOL2 format, chain E [auth A] MOL2 format, chain I [auth D] MOL2 format, chain K [auth B] MOL2 format, chain G [auth C] mmCIF format, chain E [auth A] mmCIF format, chain I [auth D] mmCIF format, chain K [auth B] mmCIF format, chain G [auth C]	E [auth A], G [auth C], I [auth D], K [auth B]	ADENOSINE MONOPHOSPHATE C₁₀ H₁₄ N₅ O₇ P UDMBCSSLTHHNCD-KQYNXXCUSA-N		Interactions Focus chain E [auth A] Focus chain G [auth C] Focus chain I [auth D] Focus chain K [auth B] Interactions & Density Focus chain E [auth A] Focus chain G [auth C] Focus chain I [auth D] Focus chain K [auth B]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain H [auth C] SDF format, chain J [auth D] SDF format, chain L [auth B] MOL2 format, chain F [auth A] MOL2 format, chain H [auth C] MOL2 format, chain J [auth D] MOL2 format, chain L [auth B] mmCIF format, chain F [auth A] mmCIF format, chain H [auth C] mmCIF format, chain J [auth D] mmCIF format, chain L [auth B]	F [auth A], H [auth C], J [auth D], L [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain H [auth C] Focus chain J [auth D] Focus chain L [auth B] Interactions & Density Focus chain F [auth A] Focus chain H [auth C] Focus chain J [auth D] Focus chain L [auth B]