8SFW | pdb_00008sfw

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with quercetin

• PDB DOI: https://doi.org/10.2210/pdb8SFW/pdb

• Classification: TRANSFERASE
• Organism(s): Tetranychus urticae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-04-11 Released: 2024-04-17 
• Deposition Author(s): Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
• Funding Organization(s): National Institute of Food and Agriculture (NIFA, United States)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free: 
  0.264 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.207 (Depositor), 0.200 (DCC) 

Starting Model: experimental

Literature

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with quercetin

Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 49.66 kDa 
• Atom Count: 3,262 
• Modeled Residue Count: 424 
• Deposited Residue Count: 437 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-glycosyltransferase 202A2	A	437	Tetranychus urticae	Mutation(s): 0  Gene Names: 107367435, UGT202A2
UniProt
Find proteins for T1KUK4 (Tetranychus urticae) Explore T1KUK4  Go to UniProtKB:  T1KUK4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UDP (Subject of Investigation/LOI)	B [auth A]	URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N
QUE (Subject of Investigation/LOI)	C [auth A]	3,5,7,3',4'-PENTAHYDROXYFLAVONE C15 H10 O7 REFJWTPEDVJJIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free:  0.264 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.207 (Depositor), 0.200 (DCC) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.884	α = 90
b = 109.42	β = 90
c = 165.84	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing
SERGUI	data collection

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-17 
Deposition Author(s): Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

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Funding Organization	Location	Grant Number
National Institute of Food and Agriculture (NIFA, United States)	United States	#2020-67014- 31179

Revision History  

• Version 1.0: 2024-04-17
  Type: Initial release