8JR5 | pdb_00008jr5

Crystal structure of Hendra Virus attachment(G) glycoprotein mutant S586N

• PDB DOI: https://doi.org/10.2210/pdb8JR5/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Hendra virus horse/Australia/Hendra/1994
• Expression System: Henipavirus hendraense
• Mutation(s): Yes 


• Deposited: 2023-06-16 Released: 2024-06-19 
• Deposition Author(s): Li, Y.H., Huang, X.Y., Xu, J.J., Chen, W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 
  0.290 (Depositor), 0.290 (DCC) 
• R-Value Work: 
  0.258 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.260 (Depositor) 

Literature

Crystal structure of Hendra Virus attachment (G) glycoprotein mutant S586N

Li, Y.H., Huang, X.Y., Xu, J.J., Chen, W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content 

• Total Structure Weight: 94.92 kDa 
• Atom Count: 6,451 
• Modeled Residue Count: 805 
• Deposited Residue Count: 832 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycoprotein G	A, B	416	Hendra virus horse/Australia/Hendra/1994	Mutation(s): 1  Gene Names: G
UniProt
Find proteins for O89343 (Hendra virus (isolate Horse/Autralia/Hendra/1994)) Explore O89343  Go to UniProtKB:  O89343
Glycosylation
Glycosylation Sites: 3

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG (Subject of Investigation/LOI)	D [auth A], E [auth A], F [auth B], G [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free:  0.290 (Depositor), 0.290 (DCC) 
• R-Value Work:  0.258 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.260 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.926	α = 90
b = 63.658	β = 97.69
c = 121.622	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
HKL-2000	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-19 
Deposition Author(s): Li, Y.H., Huang, X.Y., Xu, J.J., Chen, W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32200762

Revision History  

• Version 1.0: 2024-06-19
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Structure summary