8X92 | pdb_00008x92

Crystal structure of ROCK2 with GNS-2666 inhibitor

• PDB DOI: https://doi.org/10.2210/pdb8X92/pdb

• Classification: TRANSFERASE/INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2023-11-29 Released: 2024-12-04 
• Deposition Author(s): Park, T.H., Bong, S.M., Lee, S.J., Lee, B.I.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.240 (Depositor), 0.241 (DCC) 
• R-Value Work: 
  0.209 (Depositor), 0.214 (DCC) 

Starting Model: experimental

Literature

crystal structure of rock2 with GNS-2666 inhibitor

Park, T.H., Lee, B.I.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 90.9 kDa 
• Atom Count: 6,067 
• Modeled Residue Count: 752 
• Deposited Residue Count: 782 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rho-associated protein kinase 2	A, B	391	Homo sapiens	Mutation(s): 0  Gene Names: ROCK2, KIAA0619 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for O75116 (Homo sapiens) Explore O75116  Go to UniProtKB:  O75116
PHAROS:  O75116 GTEx:  ENSG00000134318

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
YEW (Subject of Investigation/LOI)	C [auth A], E [auth B]	~{N}-methyl-3-[[6-(2-methylpyrazol-3-yl)-1-oxidanylidene-isoquinolin-2-yl]methyl]benzamide C22 H20 N4 O2 MWHJTNPZZGOHMN-UHFFFAOYSA-N
SO4 (Subject of Investigation/LOI)	D [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.240 (Depositor), 0.241 (DCC) 
• R-Value Work:  0.209 (Depositor), 0.214 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.727	α = 90
b = 136.467	β = 90
c = 148.574	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
XDS	data reduction
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-04 
Deposition Author(s): Park, T.H., Bong, S.M., Lee, S.J., Lee, B.I.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2023R1A2C1002654

Revision History  

• Version 1.0: 2024-12-04
  Type: Initial release