8XXF | pdb_00008xxf

TtCS, oxaloacetate, acetyl-CoA complex

PDB DOI: https://doi.org/10.2210/pdb8XXF/pdb

Classification: TRANSFERASE
Organism(s): Thermosulfidibacter takaii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-01-18 Released: 2025-01-22
Deposition Author(s): Yang, L., Fang, Y.J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.33 Å
R-Value Free:
0.245 (Depositor), 0.248 (DCC)
R-Value Work:
0.187 (Depositor), 0.194 (DCC)
R-Value Observed:
0.189 (Depositor)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

TtCS, oxaloacetate, acetyl-CoA complex

Yang, L., Fang, Y.J.

To be published.

Macromolecule Content

Total Structure Weight: 309.65 kDa
Atom Count: 22,326
Modeled Residue Count: 2,648
Deposited Residue Count: 2,694
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Citrate synthase	A, B, C, D, E A, B, C, D, E, F	449	Thermosulfidibacter takaii	Mutation(s): 0 Gene Names: gltA, TST_0783 EC: 2.3.3.16
UniProt
Find proteins for A0A0S3QTD0 (Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6)) Explore A0A0S3QTD0 Go to UniProtKB: A0A0S3QTD0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0S3QTD0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO (Subject of Investigation/LOI) Query on ACO Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain N [auth F] MOL2 format, chain H [auth A] MOL2 format, chain N [auth F] mmCIF format, chain H [auth A] mmCIF format, chain N [auth F]	H [auth A], N [auth F]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain H [auth A] Focus chain N [auth F] Interactions & Density Focus chain H [auth A] Focus chain N [auth F]
COA (Subject of Investigation/LOI) Query on COA Download Ideal Coordinates CCD File SDF format, chain K [auth D] MOL2 format, chain K [auth D] mmCIF format, chain K [auth D]	K [auth D]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain K [auth D] Interactions & Density Focus chain K [auth D]
OAA (Subject of Investigation/LOI) Query on OAA Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain I [auth B] SDF format, chain J [auth D] SDF format, chain L [auth E] SDF format, chain M [auth F] MOL2 format, chain G [auth A] MOL2 format, chain I [auth B] MOL2 format, chain J [auth D] MOL2 format, chain L [auth E] MOL2 format, chain M [auth F] mmCIF format, chain G [auth A] mmCIF format, chain I [auth B] mmCIF format, chain J [auth D] mmCIF format, chain L [auth E] mmCIF format, chain M [auth F]	G [auth A], I [auth B], J [auth D], L [auth E], M [auth F]	OXALOACETATE ION C₄ H₃ O₅ KHPXUQMNIQBQEV-UHFFFAOYSA-M		Interactions Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth D] Focus chain L [auth E] Focus chain M [auth F] Interactions & Density Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth D] Focus chain L [auth E] Focus chain M [auth F]