8ZM7 | pdb_00008zm7

Engineering omega-amine transaminase for extending substrate scope by ancestral sequence reconstruction


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.205 (Depositor), 0.205 (DCC) 
  • R-Value Work: 
    0.172 (Depositor), 0.172 (DCC) 
  • R-Value Observed: 
    0.173 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Engineering omega-amine transaminase for extending substrate scope by ancestral sequence reconstruction

Huang, J.Li, N.Cai, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Amine transaminase
A, B, C, D
330Aspergillus terreusMutation(s): 0 
EC: 2.6.1.42
UniProt
Find proteins for Q0C8G1 (Aspergillus terreus (strain NIH 2624 / FGSC A1156))
Explore Q0C8G1 
Go to UniProtKB:  Q0C8G1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0C8G1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
LMR (Subject of Investigation/LOI)
Query on LMR

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CA [auth B],
DA [auth B]
(2S)-2-hydroxybutanedioic acid
C4 H6 O5
BJEPYKJPYRNKOW-REOHCLBHSA-N
SO4 (Subject of Investigation/LOI)
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth B]
BA [auth B]
FB [auth D]
GB [auth D]
HB [auth D]
AA [auth B],
BA [auth B],
FB [auth D],
GB [auth D],
HB [auth D],
IB [auth D],
R [auth A],
S [auth A],
SA [auth C],
T [auth A],
TA [auth C],
UA [auth C],
VA [auth C],
Z [auth B]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL (Subject of Investigation/LOI)
Query on GOL

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CB [auth D]
DB [auth D]
EB [auth D]
L [auth A]
M [auth A]
CB [auth D],
DB [auth D],
EB [auth D],
L [auth A],
M [auth A],
N [auth A],
O [auth A],
P [auth A],
Q [auth A],
QA [auth C],
RA [auth C],
W [auth B],
X [auth B],
Y [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL (Subject of Investigation/LOI)
Query on CL

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AB [auth D]
BB [auth D]
EA [auth C]
F [auth A]
FA [auth C]
AB [auth D],
BB [auth D],
EA [auth C],
F [auth A],
FA [auth C],
G [auth A],
GA [auth C],
H [auth A],
HA [auth C],
I [auth A],
IA [auth C],
J [auth A],
JA [auth C],
K [auth A],
KA [auth C],
LA [auth C],
MA [auth C],
NA [auth C],
OA [auth C],
PA [auth C],
U [auth B],
V [auth B],
WA [auth D],
XA [auth D],
YA [auth D],
ZA [auth D]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA (Subject of Investigation/LOI)
Query on NA

Download Ideal Coordinates CCD File 
E [auth A]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.205 (Depositor), 0.205 (DCC) 
  • R-Value Work:  0.172 (Depositor), 0.172 (DCC) 
  • R-Value Observed: 0.173 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.904α = 90
b = 169.904β = 90
c = 245.079γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata scaling
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32071268

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-14
    Type: Initial release