8ZZZ | pdb_00008zzz

Rosetta model of human LRH-1 nuclear receptor generated with XL-MS, HDX-MS, and SAXS data

• PDB DOI: https://doi.org/10.2210/pdb8ZZZ/pdb
• NAKB: 8ZZZ

• Organism(s): Homo sapiens, Takifugu rubripes
• Mutation(s): No 


• Deposited: 2019-09-13 Released: 2020-04-29 
• Deposition Author(s): Seacrist CD, Kuenze G, Hoffmann R, Burke J, Meiler J, Blind RD

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Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 11 
• Representative Model: 1 

Literature

Integrated Structural Modeling of Full-Length LRH-1 Reveals Inter-domain Interactions Contribute to Receptor Structure and Function

Seacrist CD, Kuenze G, Hoffmann R, Burke J, Meiler J, Blind RD

(2020) Structure 

• DOI: https://doi.org/10.1016/j.str.2020.04.020

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Macromolecule Content 

• Total Structure Weight: 55.72 kDa 
• Atom Count: 3,394 
• Modeled Residue Count: 376 
• Deposited Residue Count: 376 
• Unique protein chains: 3
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LRH-1 DNA-binding domain	A	102	Homo sapiens	Mutation(s): 0  Gene Names: NR5A2
UniProt & NIH Common Fund Data Resources
Find proteins for O00482 (Homo sapiens) Explore O00482  Go to UniProtKB:  O00482
PHAROS:  O00482 GTEx:  ENSG00000116833

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
LRH-1 Ligand-binding domain	B	240	Homo sapiens	Mutation(s): 0  Gene Names: NR5A2
UniProt & NIH Common Fund Data Resources
Find proteins for O00482 (Homo sapiens) Explore O00482  Go to UniProtKB:  O00482
PHAROS:  O00482 GTEx:  ENSG00000116833

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
PGC1-alpha coactivator peptide	D	10	Takifugu rubripes	Mutation(s): 0  Gene Names: Pgc1a
UniProt
Find proteins for Q3Y595 (Takifugu rubripes) Explore Q3Y595  Go to UniProtKB:  Q3Y595

Entity ID: 5
Molecule	Chains	Length	Organism	Image
DNA strand 1	E	12	N/A

Entity ID: 6
Molecule	Chains	Length	Organism	Image
DNA strand 2	F	12	N/A

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
P6L	X	(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE C40 H75 O10 P WLVNRDXLPAAELE-GDRYEXQRSA-N
ZN	Y, Z	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 11 
• Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report

Entry History 

Deposition Data

• Released Date: 2020-04-29 
Deposition Author(s): Seacrist CD, Kuenze G, Hoffmann R, Burke J, Meiler J, Blind RD

Revision History  

• Version 1.0: 2020-04-29
  Type: Initial release