9A29 | pdb_00009a29

Photoinduced intermediate M2 of bacteriorhodopsin from 0.5 to 5 millisecond

PDB DOI: https://doi.org/10.2210/pdb9A29/pdb

Organism(s): Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Mutation(s): No

Deposited: 2022-07-28 Released: 2023-11-20
Deposition Author(s): Ren, Z.

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

wwPDB ValidationFull ReportSummary Report

This is version 1.0 of the entry. See complete history.

Literature

Directional Proton Conductance in Bacteriorhodopsin Is Driven by Concentration Gradient, Not Affinity Gradient

Macromolecule Content

Total Structure Weight: 31.55 kDa
Atom Count: 1,796
Modeled Residue Count: 248
Deposited Residue Count: 248
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BACTERIORHODOPSIN	A	248	Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)	Mutation(s): 0 Gene Names: bop
UniProt
Find proteins for P02945 (Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)) Explore P02945 Go to UniProtKB: P02945
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02945
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
RET Query on RET Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	RETINAL C₂₀ H₂₈ O NCYCYZXNIZJOKI-OVSJKPMPSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Integrative Structure Snapshot

Multi-Scale: No
Multi-State: No
Ordered-State: No
Deposited Models: 1
Representative Model: 1

Structure Validation

View Full Validation Report

View Summary Validation Report

Entry History

Deposition Data

Released Date: 2023-11-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2023-11-20
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.