9C7D | pdb_00009c7d

Human monoclonal antibody MAD22-38 bound to the N-terminus of cleaved circumsporozoite protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 
    0.232 (Depositor), 0.233 (DCC) 
  • R-Value Work: 
    0.184 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 
    0.186 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Protective antibodies target cryptic epitope unmasked by cleavage of malaria sporozoite protein.

Dacon, C.Moskovitz, R.Swearingen, K.Da Silva Pereira, L.Flores-Garcia, Y.Aleshnick, M.Kanatani, S.Flynn, B.Molina-Cruz, A.Wollenberg, K.Traver, M.Kirtley, P.Purser, L.Dillon, M.Bonilla, B.Franco, A.Petros, S.Kritzberg, J.Tucker, C.Paez, G.G.Gupta, P.Shears, M.J.Pazzi, J.Edgar, J.M.Teng, A.A.Belmonte, A.Oda, K.Doumbo, S.Krymskaya, L.Skinner, J.Li, S.Ghosal, S.Kayentao, K.Ongoiba, A.Vaughan, A.Campo, J.J.Traore, B.Barillas-Mury, C.Wijayalath, W.Idris, A.Crompton, P.D.Sinnis, P.Wilder, B.K.Zavala, F.Seder, R.A.Wilson, I.A.Tan, J.

(2025) Science 387: eadr0510-eadr0510

  • DOI: https://doi.org/10.1126/science.adr0510
  • Primary Citation of Related Structures:  
    9C79, 9C7D, 9C7F

  • PubMed Abstract: 

    The most advanced monoclonal antibodies (mAbs) and vaccines against malaria target the central repeat region or closely related sequences within the Plasmodium falciparum circumsporozoite protein (PfCSP). Here, using an antigen-agnostic strategy to investigate human antibody responses to whole sporozoites, we identified a class of mAbs that target a cryptic PfCSP epitope that is only exposed after cleavage and subsequent pyroglutamylation (pGlu) of the newly formed N terminus. This pGlu-CSP epitope is not targeted by current anti-PfCSP mAbs and is not included in the licensed malaria vaccines. MAD21-101, the most potent mAb in this class, confers sterile protection against Pf infection in a human liver-chimeric mouse model. These findings reveal a site of vulnerability on the sporozoite surface that can be targeted by next-generation antimalarial interventions.


  • Organizational Affiliation
    • Antibody Biology Unit, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody MAD22-38 Fab Heavy ChainA [auth H]227Homo sapiensMutation(s): 0 
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody MAD22-38 Fab Light ChainB [auth L]213Homo sapiensMutation(s): 0 
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Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Circumsporozoite proteinC [auth B]18Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q7K740 (Plasmodium falciparum (isolate 3D7))
Explore Q7K740 
Go to UniProtKB:  Q7K740
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7K740
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranoseD [auth A]6N-Glycosylation
Glycosylation Resources
GlyTouCan:  G82348BZ
GlyCosmos:  G82348BZ
GlyGen:  G82348BZ
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
PCA
Query on PCA
C [auth B]L-PEPTIDE LINKINGC5 H7 N O3GLN
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free:  0.232 (Depositor), 0.233 (DCC) 
  • R-Value Work:  0.184 (Depositor), 0.184 (DCC) 
  • R-Value Observed: 0.186 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.803α = 90
b = 76.355β = 90
c = 88.797γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Bill & Melinda Gates FoundationUnited StatesDAC-1601-INV-056202

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-25
    Type: Initial release
  • Version 1.1: 2025-01-15
    Changes: Database references
  • Version 1.2: 2025-01-22
    Changes: Database references