9CDJ | pdb_00009cdj

MORC2 ATPase with DNA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

MORC2 is a phosphorylation-dependent DNA compaction machine.

Tan, W.Park, J.Venugopal, H.Lou, J.Dias, P.S.Baldoni, P.L.Moon, K.W.Dite, T.A.Keenan, C.R.Gurzau, A.D.Lee, J.Johanson, T.M.Leis, A.Yousef, J.Vaibhav, V.Dagley, L.F.Ang, C.S.Corso, L.D.Davidovich, C.Vervoort, S.J.Smyth, G.K.Blewitt, M.E.Allan, R.S.Hinde, E.D'Arcy, S.Ryu, J.K.Shakeel, S.

(2025) Nat Commun 16: 5606-5606

  • DOI: https://doi.org/10.1038/s41467-025-60751-z
  • Primary Citation of Related Structures:  
    9CDF, 9CDG, 9CDH, 9CDI, 9CDJ

  • PubMed Abstract: 

    The Microrchidia (MORC) family of chromatin-remodelling ATPases is pivotal in forming higher-order chromatin structures that suppress transcription. The exact mechanisms of MORC-induced chromatin remodelling have been elusive. Here, we report an in vitro reconstitution of full-length MORC2, the most commonly mutated MORC member, linked to various cancers and neurological disorders. MORC2 possesses multiple DNA-binding sites that undergo structural rearrangement upon DNA binding. MORC2 locks onto the DNA using its C-terminal domain (CTD) and acts as a clamp. A conserved phosphate-interacting motif within the CTD was found to regulate ATP hydrolysis and cooperative DNA binding. Importantly, MORC2 mediates chromatin remodelling via ATP hydrolysis-dependent DNA compaction in vitro, regulated by the phosphorylation state of its CTD. These findings position MORC2 CTD phosphorylation as a critical regulator of chromatin remodelling and a promising therapeutic target.


  • Organizational Affiliation

    WEHI, 1G Royal Parade, Parkville, VIC, 3052, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATPase MORC2
A, B
603Homo sapiensMutation(s): 0 
Gene Names: MORC2KIAA0852ZCWCC1
EC: 3.6.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6X9 (Homo sapiens)
Explore Q9Y6X9 
Go to UniProtKB:  Q9Y6X9
PHAROS:  Q9Y6X9
GTEx:  ENSG00000133422 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y6X9
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ANP (Subject of Investigation/LOI)
Query on ANP

Download Ideal Coordinates CCD File 
D [auth A],
G [auth B]
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A],
F [auth B]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
E [auth A],
H [auth B]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia2026635
National Health and Medical Research Council (NHMRC, Australia)Australia2016827

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-09
    Type: Initial release