9ETS | pdb_00009ets

Sulfolobus acidocaldarius AAP filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Towards a molecular picture of the archaeal cell surface.

Gaines, M.C.Isupov, M.N.McLaren, M.Mollat, C.L.Haque, R.U.Stephenson, J.K.Sivabalasarma, S.Hanus, C.Kattnig, D.Gold, V.A.M.Albers, S.Daum, B.

(2024) Nat Commun 15: 10401-10401

  • DOI: https://doi.org/10.1038/s41467-024-53986-9
  • Primary Citation of Related Structures:  
    8QX4, 8RZL, 9ETS, 9ETT, 9EV0

  • PubMed Abstract: 

    Archaea produce various protein filaments with specialised functions. While some archaea produce only one type of filament, the archaeal model species Sulfolobus acidocaldarius generates four. These include rotary swimming propellers analogous to bacterial flagella (archaella), pili for twitching motility (Aap), adhesive fibres (threads), and filaments facilitating homologous recombination upon UV stress (UV pili). Here, we use cryo-electron microscopy to describe the structure of the S. acidocaldarius archaellum at 2.0 Å resolution, and update the structures of the thread and the Aap pilus at 2.7 Å and 2.6 Å resolution, respectively. We define features unique to archaella of the order Sulfolobales and compare their structure to those of Aap and threads in the context of the S-layer. We define distinct N-glycan patterns in the three filaments and identify a putative O-glycosylation site in the thread. Finally, we ascertain whether N-glycan truncation leads to structural changes in archaella and Aap.


  • Organizational Affiliation

    Living Systems Institute, University of Exeter, Exeter, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DUF4352 domain-containing protein141Sulfolobus acidocaldariusMutation(s): 0 
UniProt
Find proteins for Q4J6H7 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
Explore Q4J6H7 
Go to UniProtKB:  Q4J6H7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4J6H7
Glycosylation
Glycosylation Sites: 3
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
AB [auth 0],
AE [auth GB],
BB [auth 1],
BC [auth RA],
CD [auth sA],
AB [auth 0],
AE [auth GB],
BB [auth 1],
BC [auth RA],
CD [auth sA],
DB [auth 3],
DE [auth JB],
EB [auth 4],
EC [auth UA],
FD [auth vA],
GB [auth 6],
GE [auth MB],
HB [auth 7],
HC [auth XA],
ID [auth yA],
JB [auth 9],
JE [auth PB],
KB [auth AA],
KC [auth aA],
LA [auth k],
LD [auth 1A],
MA [auth m],
MB [auth CA],
ME [auth SB],
NB [auth DA],
NC [auth dA],
OA [auth o],
OD [auth 4A],
PA [auth p],
PB [auth FA],
PE [auth VB],
QB [auth GA],
QC [auth gA],
RA [auth r],
RD [auth 7A],
SA [auth s],
SB [auth IA],
TB [auth JA],
TC [auth jA],
UA [auth u],
UD [auth AB],
VA [auth v],
VB [auth LA],
WC [auth mA],
XA [auth x],
XD [auth DB],
YA [auth y],
YB [auth OA],
ZC [auth pA]
5N/AN-Glycosylation
Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
AC [auth QA],
BD [auth rA],
CB [auth 2],
CE [auth IB],
DC [auth TA],
AC [auth QA],
BD [auth rA],
CB [auth 2],
CE [auth IB],
DC [auth TA],
ED [auth uA],
FB [auth 5],
FE [auth LB],
GC [auth WA],
HD [auth xA],
IB [auth 8],
IE [auth OB],
JC [auth ZA],
KD [auth 0A],
LB [auth BA],
LE [auth RB],
MC [auth cA],
NA [auth n],
ND [auth 3A],
OB [auth EA],
OE [auth UB],
PC [auth fA],
QA [auth q],
QD [auth 6A],
RB [auth HA],
RE [auth XB],
SC [auth iA],
TA [auth t],
TD [auth 9A],
UB [auth KA],
VC [auth lA],
WA [auth w],
WD [auth CB],
XB [auth NA],
YC [auth oA],
ZA [auth z],
ZD [auth FB]
3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G34031ES
GlyCosmos:  G34031ES
GlyGen:  G34031ES
Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
AD [auth qA],
BE [auth HB],
CC [auth SA],
DD [auth tA],
EE [auth KB],
AD [auth qA],
BE [auth HB],
CC [auth SA],
DD [auth tA],
EE [auth KB],
FC [auth VA],
GD [auth wA],
HE [auth NB],
IC [auth YA],
JD [auth zA],
KE [auth QB],
LC [auth bA],
MD [auth 2A],
NE [auth TB],
OC [auth eA],
PD [auth 5A],
QE [auth WB],
RC [auth hA],
SD [auth 8A],
UC [auth kA],
VD [auth BB],
WB [auth MA],
XC [auth nA],
YD [auth EB],
ZB [auth PA]
4N/AN-Glycosylation
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0267
RECONSTRUCTIONcryoSPARC4.4.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union109784

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-05
    Type: Initial release