9FH2 | pdb_00009fh2

Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 1

PDB DOI: https://doi.org/10.2210/pdb9FH2/pdb
EM Map EMD-50437: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2024-05-26 Released: 2025-06-11
Deposition Author(s): Zielinski, M., Peralta Reyes, F.S., Gremer, L., Pagnon de la Vega, M., Roeder, C., Heidler, T.V., Syvaenen, S., Willbold, D., Sehlin, D., Ingelsson, M., Schroeder, G.F.
Funding Organization(s): Helmholtz Association

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM Structures of Amyloid-beta Fibrils from human and murine brains carrying the Uppsala AbetaUpp(1-42)delta(19-24) mutation

Zielinski, M., Peralta Reyes, F.S., Gremer, L., Pagnon de la Vega, M., Roeder, C., Heidler, T.V., Syvaenen, S., Willbold, D., Sehlin, D., Ingelsson, M., Schroeder, G.F.

To be published.

Macromolecule Content

Total Structure Weight: 38.11 kDa
Atom Count: 1,990
Modeled Residue Count: 280
Deposited Residue Count: 360
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amyloid-beta precursor protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	36	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P05067 (Homo sapiens) Explore P05067 Go to UniProtKB: P05067
PHAROS: P05067 GTEx: ENSG00000142192
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05067
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1
MODEL REFINEMENT	ISOLDE	1.7.1
RECONSTRUCTION	RELION	3

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-06-11

Deposition Author(s):

Peralta Reyes, F.S.

Pagnon de la Vega, M.

Schroeder, G.F.

Funding Organization	Location	Grant Number
Helmholtz Association	Germany	IVF

Revision History (Full details and data files)

Version 1.0: 2025-06-11
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.