9HFP | pdb_00009hfp

ROCK2 IN COMPLEX WITH CPD7


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 
    0.220 (Depositor), 0.234 (DCC) 
  • R-Value Work: 
    0.205 (Depositor), 0.214 (DCC) 
  • R-Value Observed: 
    0.206 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Discovery and Optimization of Selective Inhibitors of Large Tumor Suppressor Kinases LATS1 and 2 for In Vivo Investigation of the Hippo-YAP Pathway in Tissue Regeneration.

Namoto, K.Vangrevelinghe, E.Machauer, R.Behnke, D.Buschmann, N.Lachal, J.Schipp, K.Sorge, M.Barker, K.Fabbiani, F.Piechon, P.Connor, L.E.Laurent, S.Lohmann, F.Unterreiner, V.George, E.L.Redmond, E.Wang, L.Scheufler, C.Sohal, B.Sailer, A.W.Glatthar, R.Tchorz, J.S.Maibaum, J.

(2025) J Med Chem 68: 13591-13608

  • DOI: https://doi.org/10.1021/acs.jmedchem.5c00350
  • Primary Citation of Related Structures:  
    9HFP

  • PubMed Abstract: 

    Large Tumor Suppressor kinases LATS1 and 2 (LATS1/2) are serine/threonine kinases and core regulators of the Hippo-YAP pathway. Inhibition of LATS1/2 promotes nuclear translocation of nonphosphorylated YAP, thereby initiating a downstream cascade promoting cell proliferation. We set out to investigate the potential of LATS inhibition as a therapeutic approach to enhance tissue regeneration and hereby report a structure-guided optimization of screening hit 1 for potency, binding efficiency, and physicochemical properties, leading to a highly selective, cellularly active, and orally available tool compound 7 (NIBR-LTSi) that demonstrated ex vivo target engagement and in vivo YAP target gene activation in rodents.


  • Organizational Affiliation
    • Novartis Biomedical Research, CH-4002 Basel, Switzerland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rho-associated protein kinase 2396Homo sapiensMutation(s): 0 
Gene Names: ROCK2KIAA0619
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for O75116 (Homo sapiens)
Explore O75116 
Go to UniProtKB:  O75116
PHAROS:  O75116
GTEx:  ENSG00000134318 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75116
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1IUI (Subject of Investigation/LOI)
Query on A1IUI

Download Ideal Coordinates CCD File 
B [auth A]~{N}-[4-[(3~{R})-piperidin-3-yl]oxyphenyl]-1~{H}-pyrrolo[2,3-b]pyridin-4-amine
C18 H20 N4 O
IYFCFYWXRIVCTH-OAHLLOKOSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free:  0.220 (Depositor), 0.234 (DCC) 
  • R-Value Work:  0.205 (Depositor), 0.214 (DCC) 
  • R-Value Observed: 0.206 (Depositor) 
Space Group: P 62 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.968α = 90
b = 90.968β = 90
c = 338.333γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
XSCALEdata scaling
BUSTERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-09
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Database references