Integrin alpha-v beta-3 in complex with rhodostomin
Wang, Y.T., Chuang, W.J.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Integrin alpha-V,Integrin alpha-V,Uncharacterized protein DKFZp686C11235 | 1,184 | Homo sapiens | Mutation(s): 0  Gene Names: ITGAV, MSK8, VNRA, VTNR, DKFZp686C11235 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06756 (Homo sapiens) Explore P06756  Go to UniProtKB:  P06756 | |||||
PHAROS:  P06756 GTEx:  ENSG00000138448  | |||||
Find proteins for Q6MZV7 (Homo sapiens) Explore Q6MZV7  Go to UniProtKB:  Q6MZV7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P06756Q6MZV7 | ||||
Glycosylation | |||||
Glycosylation Sites: 6 | Go to GlyGen: P06756-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Integrin beta-3,Integrin beta-3,Uncharacterized protein DKFZp686C11235 | 919 | Homo sapiens | Mutation(s): 0  Gene Names: ITGB3, GP3A, DKFZp686C11235 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05106 (Homo sapiens) Explore P05106  Go to UniProtKB:  P05106 | |||||
PHAROS:  P05106 GTEx:  ENSG00000259207  | |||||
Find proteins for Q6MZV7 (Homo sapiens) Explore Q6MZV7  Go to UniProtKB:  Q6MZV7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P05106Q6MZV7 | ||||
Glycosylation | |||||
Glycosylation Sites: 3 | Go to GlyGen: P05106-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Disintegrin rhodostomin | 68 | Calloselasma rhodostoma | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P30403 (Calloselasma rhodostoma) Explore P30403  Go to UniProtKB:  P30403 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P30403 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D, G | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Entity ID: 5 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, H, I [auth J], J [auth K] | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 6 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G93290PO GlyCosmos:  G93290PO GlyGen:  G93290PO |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | P [auth A], T [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA (Subject of Investigation/LOI) Query on CA | K [auth A] L [auth A] M [auth A] N [auth A] O [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | Q [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.20.1_4487: |
Funding Organization | Location | Grant Number |
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National Science Council (NSC, Taiwan) | Taiwan | -- |