9IVT | pdb_00009ivt

Crystal structure of Ang1 receptor-binding domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 
    0.208 (Depositor), 0.211 (DCC) 
  • R-Value Work: 
    0.177 (Depositor), 0.188 (DCC) 
  • R-Value Observed: 
    0.179 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Development of a recombinant Ang1 variant with enhanced Tie2 binding and its application to attenuate sepsis in mice.

Wang, R.Li, H.Xie, Z.Huang, M.Xu, P.Yuan, C.Li, J.Flaumenhaft, R.Huang, M.Jiang, L.

(2025) Sci Adv 11: eads1796-eads1796

  • DOI: https://doi.org/10.1126/sciadv.ads1796
  • Primary Citation of Related Structures:  
    9IVT, 9IVU

  • PubMed Abstract: 

    The angiopoietin (Ang)-Tie axis, critical for endothelial cell function and vascular development, is a promising therapeutic target for treating vascular disorders and inflammatory conditions like sepsis. This study aimed to enhance the binding affinity of recombinant Ang1 variants to the Tie2 and explore their therapeutic potential. Structural insights from the Ang1-Tie2 complex enabled the identification of key residues within the Ang1 receptor binding domain (RBD) critical for Tie2 interaction. Molecular dynamics simulations revealed that Met 436 Arg (M436R) and Ala 451 Asp (A451D) could improve Ang1's Tie2 binding affinity. One variant, Ang1-RBD A451D , demonstrated a 100-fold increase compared to the wild type. Cellular assays revealed that Ang1 A451D enhanced Tie2 phosphorylation, promoting endothelial cell migration and tube formation. In vivo, this variant effectively reduced inflammatory cytokines and attenuated organ damage in septic mice. These findings highlight Ang1 A451D as a promising therapeutic candidate for vascular diseases, offering notable clinical potential for mitigating sepsis-related vascular dysfunction.


  • Organizational Affiliation
    • College of Chemistry, Fuzhou University, Fuzhou 350116, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Angiopoietin-1229Homo sapiensMutation(s): 0 
Gene Names: ANGPT1KIAA0003
UniProt & NIH Common Fund Data Resources
Find proteins for Q15389 (Homo sapiens)
Explore Q15389 
Go to UniProtKB:  Q15389
PHAROS:  Q15389
GTEx:  ENSG00000154188 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15389
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free:  0.208 (Depositor), 0.211 (DCC) 
  • R-Value Work:  0.177 (Depositor), 0.188 (DCC) 
  • R-Value Observed: 0.179 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.6α = 90
b = 61.98β = 100.59
c = 44.55γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
HKL-2000data reduction
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82070142

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-02
    Type: Initial release