9JFC | pdb_00009jfc

Crystal structure of Pseudomonas aeruginosa SuhB complexed with Gallic acid in monoclinic space group

PDB DOI: https://doi.org/10.2210/pdb9JFC/pdb

Classification: HYDROLASE
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-09-04 Released: 2025-09-10
Deposition Author(s): Yadav, V.K., Shukla, M., Maji, S., Bhattacharyya, S.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.234 (Depositor), 0.219 (DCC)
R-Value Work:
0.182 (Depositor), 0.171 (DCC)
R-Value Observed:
0.185 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Pseudomonas aeruginosa SuhB complexed with Gallic acid in monoclinic space group

Yadav, V.K., Shukla, M., Maji, S., Bhattacharyya, S.

To be published.

Macromolecule Content

Total Structure Weight: 120.12 kDa
Atom Count: 8,715
Modeled Residue Count: 1,084
Deposited Residue Count: 1,092
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nus factor SuhB	A, B [auth E], C [auth I], D [auth M]	273	Pseudomonas aeruginosa PAO1	Mutation(s): 0 Gene Names: suhB, PA3818 EC: 3.1.3.25
UniProt
Find proteins for Q9HXI4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HXI4 Go to UniProtKB: Q9HXI4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9HXI4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDE (Subject of Investigation/LOI) Query on GDE Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain H [auth A] SDF format, chain K [auth I] SDF format, chain N [auth M] MOL2 format, chain F [auth A] MOL2 format, chain H [auth A] MOL2 format, chain K [auth I] MOL2 format, chain N [auth M] mmCIF format, chain F [auth A] mmCIF format, chain H [auth A] mmCIF format, chain K [auth I] mmCIF format, chain N [auth M]	F [auth A], H [auth A], K [auth I], N [auth M]	3,4,5-trihydroxybenzoic acid C₇ H₆ O₅ LNTHITQWFMADLM-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain H [auth A] Focus chain K [auth I] Focus chain N [auth M] Interactions & Density Focus chain F [auth A] Focus chain H [auth A] Focus chain K [auth I] Focus chain N [auth M]
DTT Query on DTT Download Ideal Coordinates CCD File SDF format, chain I [auth E] SDF format, chain M [auth I] MOL2 format, chain I [auth E] MOL2 format, chain M [auth I] mmCIF format, chain I [auth E] mmCIF format, chain M [auth I]	I [auth E], M [auth I]	2,3-DIHYDROXY-1,4-DITHIOBUTANE C₄ H₁₀ O₂ S₂ VHJLVAABSRFDPM-IMJSIDKUSA-N		Interactions Focus chain I [auth E] Focus chain M [auth I] Interactions & Density Focus chain I [auth E] Focus chain M [auth I]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth A] SDF format, chain J [auth E] SDF format, chain L [auth I] SDF format, chain O [auth M] MOL2 format, chain E [auth A] MOL2 format, chain G [auth A] MOL2 format, chain J [auth E] MOL2 format, chain L [auth I] MOL2 format, chain O [auth M] mmCIF format, chain E [auth A] mmCIF format, chain G [auth A] mmCIF format, chain J [auth E] mmCIF format, chain L [auth I] mmCIF format, chain O [auth M]	E [auth A], G [auth A], J [auth E], L [auth I], O [auth M]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain G [auth A] Focus chain J [auth E] Focus chain L [auth I] Focus chain O [auth M] Interactions & Density Focus chain E [auth A] Focus chain G [auth A] Focus chain J [auth E] Focus chain L [auth I] Focus chain O [auth M]