Download MendeleyRevisiting the co-crystal structure of a DNA glycosylase with photocaged substrate: a suitable time-resolved crystallography target?
Imura, T., Hosokawa, Y., Yang, K.C., Ban, Y., Shih, H.Y., Yamamoto, J., Maestre-Reyna, M.(2025) IUCrJ 12: 515-522
- PubMed: 40658017
- DOI: https://doi.org/10.1107/S2052252525006062
- Primary Citation of Related Structures:
9KKY, 9KL8 - PubMed Abstract:
Co-crystal structures of a base-excision DNA-repair enzyme (human 8-oxoguanine DNA glycosylase; hOgg1) in complex with a photocaged 8-oxoguanine DNA lesion were determined before and after uncaging via illumination at 2.81 and 2.48 Å resolution, respectively. The structures were carefully reassessed to rapidly expand the target repertoire of light-triggered time-resolved macromolecular crystallography. Late-intermediate cryo-trapping after uncaging revealed the partial accommodation of 8-oxoguanine in the active site with 68% occupancy, which did not induce full active-site adaptation to the catalytic state. Crystal illumination led to a light-dependent loss of diffraction power, likely due to crystal-packing collapse during the very late reaction stages. This work therefore not only demonstrates that hOgg1 is well suited for time-resolved crystallography, but also that such analysis is necessary to determine further steps in its reaction.
- Division of Chemistry, Graduate School of Engineering Science, University of Osaka, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
Organizational Affiliation:
