9MZT | pdb_00009mzt

F pilus filament from conjugative plasmid pED208

PDB DOI: https://doi.org/10.2210/pdb9MZT/pdb
EM Map EMD-48768: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Escherichia coli
Mutation(s): No

Deposited: 2025-01-23 Released: 2025-04-16
Deposition Author(s): Lea, S., Deme, J., Lungren, C.A.K.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.11 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

F pilus filament from conjugative plasmid pED208

Lea, S., Deme, J., Lungren, C.A.K.

To be published.

Macromolecule Content

Total Structure Weight: 403.67 kDa
Atom Count: 28,143
Modeled Residue Count: 3,392
Deposited Residue Count: 3,392
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pilin	A AA [auth a] AB [auth FA] B BA [auth b] A, AA [auth a], AB [auth FA], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	64	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P12060 (Salmonella typhi) Explore P12060 Go to UniProtKB: P12060
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P12060
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LHG Query on LHG Download Ideal Coordinates CCD File SDF format, chain AC [auth U] SDF format, chain AD [auth u] SDF format, chain BB [auth A] SDF format, chain BC [auth V] SDF format, chain BD [auth v] SDF format, chain CB [auth A] SDF format, chain CC [auth W] SDF format, chain DB [auth B] SDF format, chain DC [auth X] SDF format, chain EB [auth B] SDF format, chain EC [auth Y] SDF format, chain FB [auth B] SDF format, chain FC [auth Z] SDF format, chain GB [auth C] SDF format, chain GC [auth a] SDF format, chain HB [auth C] SDF format, chain HC [auth b] SDF format, chain IB [auth D] SDF format, chain IC [auth c] SDF format, chain JB [auth E] SDF format, chain JC [auth d] SDF format, chain KB [auth E] SDF format, chain KC [auth e] SDF format, chain LB [auth F] SDF format, chain LC [auth f] SDF format, chain MB [auth G] SDF format, chain MC [auth g] SDF format, chain NB [auth H] SDF format, chain NC [auth h] SDF format, chain OB [auth I] SDF format, chain OC [auth i] SDF format, chain PB [auth J] SDF format, chain PC [auth j] SDF format, chain QB [auth K] SDF format, chain QC [auth k] SDF format, chain RB [auth L] SDF format, chain RC [auth l] SDF format, chain SB [auth M] SDF format, chain SC [auth m] SDF format, chain TB [auth N] SDF format, chain TC [auth n] SDF format, chain UB [auth O] SDF format, chain UC [auth o] SDF format, chain VB [auth P] SDF format, chain VC [auth p] SDF format, chain WB [auth Q] SDF format, chain WC [auth q] SDF format, chain XB [auth R] SDF format, chain XC [auth r] SDF format, chain YB [auth S] SDF format, chain YC [auth s] SDF format, chain ZB [auth T] SDF format, chain ZC [auth t] MOL2 format, chain AC [auth U] MOL2 format, chain AD [auth u] MOL2 format, chain BB [auth A] MOL2 format, chain BC [auth V] MOL2 format, chain BD [auth v] MOL2 format, chain CB [auth A] MOL2 format, chain CC [auth W] MOL2 format, chain DB [auth B] MOL2 format, chain DC [auth X] MOL2 format, chain EB [auth B] MOL2 format, chain EC [auth Y] MOL2 format, chain FB [auth B] MOL2 format, chain FC [auth Z] MOL2 format, chain GB [auth C] MOL2 format, chain GC [auth a] MOL2 format, chain HB [auth C] MOL2 format, chain HC [auth b] MOL2 format, chain IB [auth D] MOL2 format, chain IC [auth c] MOL2 format, chain JB [auth E] MOL2 format, chain JC [auth d] MOL2 format, chain KB [auth E] MOL2 format, chain KC [auth e] MOL2 format, chain LB [auth F] MOL2 format, chain LC [auth f] MOL2 format, chain MB [auth G] MOL2 format, chain MC [auth g] MOL2 format, chain NB [auth H] MOL2 format, chain NC [auth h] MOL2 format, chain OB [auth I] MOL2 format, chain OC [auth i] MOL2 format, chain PB [auth J] MOL2 format, chain PC [auth j] MOL2 format, chain QB [auth K] MOL2 format, chain QC [auth k] MOL2 format, chain RB [auth L] MOL2 format, chain RC [auth l] MOL2 format, chain SB [auth M] MOL2 format, chain SC [auth m] MOL2 format, chain TB [auth N] MOL2 format, chain TC [auth n] MOL2 format, chain UB [auth O] MOL2 format, chain UC [auth o] MOL2 format, chain VB [auth P] MOL2 format, chain VC [auth p] MOL2 format, chain WB [auth Q] MOL2 format, chain WC [auth q] MOL2 format, chain XB [auth R] MOL2 format, chain XC [auth r] MOL2 format, chain YB [auth S] MOL2 format, chain YC [auth s] MOL2 format, chain ZB [auth T] MOL2 format, chain ZC [auth t] mmCIF format, chain AC [auth U] mmCIF format, chain AD [auth u] mmCIF format, chain BB [auth A] mmCIF format, chain BC [auth V] mmCIF format, chain BD [auth v] mmCIF format, chain CB [auth A] mmCIF format, chain CC [auth W] mmCIF format, chain DB [auth B] mmCIF format, chain DC [auth X] mmCIF format, chain EB [auth B] mmCIF format, chain EC [auth Y] mmCIF format, chain FB [auth B] mmCIF format, chain FC [auth Z] mmCIF format, chain GB [auth C] mmCIF format, chain GC [auth a] mmCIF format, chain HB [auth C] mmCIF format, chain HC [auth b] mmCIF format, chain IB [auth D] mmCIF format, chain IC [auth c] mmCIF format, chain JB [auth E] mmCIF format, chain JC [auth d] mmCIF format, chain KB [auth E] mmCIF format, chain KC [auth e] mmCIF format, chain LB [auth F] mmCIF format, chain LC [auth f] mmCIF format, chain MB [auth G] mmCIF format, chain MC [auth g] mmCIF format, chain NB [auth H] mmCIF format, chain NC [auth h] mmCIF format, chain OB [auth I] mmCIF format, chain OC [auth i] mmCIF format, chain PB [auth J] mmCIF format, chain PC [auth j] mmCIF format, chain QB [auth K] mmCIF format, chain QC [auth k] mmCIF format, chain RB [auth L] mmCIF format, chain RC [auth l] mmCIF format, chain SB [auth M] mmCIF format, chain SC [auth m] mmCIF format, chain TB [auth N] mmCIF format, chain TC [auth n] mmCIF format, chain UB [auth O] mmCIF format, chain UC [auth o] mmCIF format, chain VB [auth P] mmCIF format, chain VC [auth p] mmCIF format, chain WB [auth Q] mmCIF format, chain WC [auth q] mmCIF format, chain XB [auth R] mmCIF format, chain XC [auth r] mmCIF format, chain YB [auth S] mmCIF format, chain YC [auth s] mmCIF format, chain ZB [auth T] mmCIF format, chain ZC [auth t]	AC [auth U] AD [auth u] BB [auth A] BC [auth V] BD [auth v] AC [auth U], AD [auth u], BB [auth A], BC [auth V], BD [auth v], CB [auth A], CC [auth W], DB [auth B], DC [auth X], EB [auth B], EC [auth Y], FB [auth B], FC [auth Z], GB [auth C], GC [auth a], HB [auth C], HC [auth b], IB [auth D], IC [auth c], JB [auth E], JC [auth d], KB [auth E], KC [auth e], LB [auth F], LC [auth f], MB [auth G], MC [auth g], NB [auth H], NC [auth h], OB [auth I], OC [auth i], PB [auth J], PC [auth j], QB [auth K], QC [auth k], RB [auth L], RC [auth l], SB [auth M], SC [auth m], TB [auth N], TC [auth n], UB [auth O], UC [auth o], VB [auth P], VC [auth p], WB [auth Q], WC [auth q], XB [auth R], XC [auth r], YB [auth S], YC [auth s], ZB [auth T], ZC [auth t]	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C₃₈ H₇₅ O₁₀ P BIABMEZBCHDPBV-MPQUPPDSSA-N		Interactions Focus chain AC [auth U] Focus chain AD [auth u] Focus chain BB [auth A] Focus chain BC [auth V] Focus chain BD [auth v] Focus chain CB [auth A] Focus chain CC [auth W] Focus chain DB [auth B] Focus chain DC [auth X] Focus chain EB [auth B] Focus chain EC [auth Y] Focus chain FB [auth B] Focus chain FC [auth Z] Focus chain GB [auth C] Focus chain GC [auth a] Focus chain HB [auth C] Focus chain HC [auth b] Focus chain IB [auth D] Focus chain IC [auth c] Focus chain JB [auth E] Focus chain JC [auth d] Focus chain KB [auth E] Focus chain KC [auth e] Focus chain LB [auth F] Focus chain LC [auth f] Focus chain MB [auth G] Focus chain MC [auth g] Focus chain NB [auth H] Focus chain NC [auth h] Focus chain OB [auth I] Focus chain OC [auth i] Focus chain PB [auth J] Focus chain PC [auth j] Focus chain QB [auth K] Focus chain QC [auth k] Focus chain RB [auth L] Focus chain RC [auth l] Focus chain SB [auth M] Focus chain SC [auth m] Focus chain TB [auth N] Focus chain TC [auth n] Focus chain UB [auth O] Focus chain UC [auth o] Focus chain VB [auth P] Focus chain VC [auth p] Focus chain WB [auth Q] Focus chain WC [auth q] Focus chain XB [auth R] Focus chain XC [auth r] Focus chain YB [auth S] Focus chain YC [auth s] Focus chain ZB [auth T] Focus chain ZC [auth t] Interactions & Density Focus chain AC [auth U] Focus chain AD [auth u] Focus chain BB [auth A] Focus chain BC [auth V] Focus chain BD [auth v] Focus chain CB [auth A] Focus chain CC [auth W] Focus chain DB [auth B] Focus chain DC [auth X] Focus chain EB [auth B] Focus chain EC [auth Y] Focus chain FB [auth B] Focus chain FC [auth Z] Focus chain GB [auth C] Focus chain GC [auth a] Focus chain HB [auth C] Focus chain HC [auth b] Focus chain IB [auth D] Focus chain IC [auth c] Focus chain JB [auth E] Focus chain JC [auth d] Focus chain KB [auth E] Focus chain KC [auth e] Focus chain LB [auth F] Focus chain LC [auth f] Focus chain MB [auth G] Focus chain MC [auth g] Focus chain NB [auth H] Focus chain NC [auth h] Focus chain OB [auth I] Focus chain OC [auth i] Focus chain PB [auth J] Focus chain PC [auth j] Focus chain QB [auth K] Focus chain QC [auth k] Focus chain RB [auth L] Focus chain RC [auth l] Focus chain SB [auth M] Focus chain SC [auth m] Focus chain TB [auth N] Focus chain TC [auth n] Focus chain UB [auth O] Focus chain UC [auth o] Focus chain VB [auth P] Focus chain VC [auth p] Focus chain WB [auth Q] Focus chain WC [auth q] Focus chain XB [auth R] Focus chain XC [auth r] Focus chain YB [auth S] Focus chain YC [auth s] Focus chain ZB [auth T] Focus chain ZC [auth t]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
THC Query on THC	A AA [auth a] AB [auth FA] B BA [auth b] A, AA [auth a], AB [auth FA], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	L-PEPTIDE LINKING	C₆ H₁₁ N O₄		THR