9U3U | pdb_00009u3u

Cryo-EM structure of human AC9_delC

PDB DOI: https://doi.org/10.2210/pdb9U3U/pdb
EM Map EMD-63827: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens, human respiratory syncytial virus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-03-18 Released: 2025-06-11
Deposition Author(s): Suzuki, S., Nomura, R., Suzuki, H., Nishikawa, K., Fujiyoshi, Y.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Activation mechanism of human adenylyl cyclase 9 observed by cryo-electron microscopy

Nomura, S., Suzuki, S., Nishikawa, K., Suzuki, H., Fujiyoshi, Y.

To be published.

Macromolecule Content

Total Structure Weight: 181.56 kDa
Atom Count: 6,702
Modeled Residue Count: 848
Deposited Residue Count: 1,622
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adenylate cyclase type 9,Protein M2-1	A	1,622	Homo sapiens, human respiratory syncytial virus This entity is chimeric	Mutation(s): 0 Gene Names: ADCY9, KIAA0520, M2-1mGFP EC: 4.6.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for O60503 (Homo sapiens) Explore O60503 Go to UniProtKB: O60503
PHAROS: O60503 GTEx: ENSG00000162104
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O60503
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-06-11

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	20H00451
Japan Society for the Promotion of Science (JSPS)	Japan	20K17245

Revision History (Full details and data files)

Version 1.0: 2025-06-11
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.