1B8D | pdb_00001b8d

CRYSTAL STRUCTURE OF A PHYCOUROBILIN-CONTAINING PHYCOERYTHRIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1b8da_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycoerythrin alpha subunit	(Griffithsia monilis ) [TaxId: 42003 ],	SCOPe (2.08)
C [auth K]	d1b8dk_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycoerythrin alpha subunit	(Griffithsia monilis ) [TaxId: 42003 ],	SCOPe (2.08)
B	d1b8db_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycoerythrin beta subunit	(Griffithsia monilis ) [TaxId: 42003 ],	SCOPe (2.08)
D [auth L]	d1b8dl_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycoerythrin beta subunit	(Griffithsia monilis ) [TaxId: 42003 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8023898	4000579	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Globin-like	8036278	3000554	SCOP2 (2022-06-29)
C [auth K]	SCOP2B Superfamily	Globin-like	8036278	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8023901	4000579	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8036281	3000554	SCOP2 (2022-06-29)
D [auth L]	SCOP2B Superfamily	Globin-like	8036281	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phycobilisome	e1b8dA1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
C [auth K]	Phycobilisome	e1b8dK1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
B	Phycobilisome	e1b8dB1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
D [auth L]	Phycobilisome	e1b8dL1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
C [auth K]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
B	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
D [auth L]	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth K]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B, D [auth L]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth K]	PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN))	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D [auth L]	PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN))	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
E [auth G]	PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN))	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth K]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C [auth K]	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C [auth K]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B, D [auth L]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D [auth L]	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D [auth L]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D [auth L]	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079
E [auth G]	UNK	RESID: AA0070

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.