1OHF | pdb_00001ohf

The refined structure of Nudaurelia capensis omega virus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ohfa_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)
C [auth B]	d1ohfb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)
E [auth C]	d1ohfc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)
G [auth D]	d1ohfd_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Tetraviridae-like VP	8025096	4000809	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_A21_1	e1ohfA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
A	Peptidase_A21	e1ohfA3	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)
C [auth B]	Peptidase_A21_1	e1ohfB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
C [auth B]	Peptidase_A21	e1ohfB2	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)
E [auth C]	Peptidase_A21_1	e1ohfC3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
E [auth C]	Peptidase_A21	e1ohfC2	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)
G [auth D]	Peptidase_A21_1	e1ohfD2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
G [auth D]	Peptidase_A21	e1ohfD1	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)
C [auth B]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C [auth B]	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)
E [auth C]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E [auth C]	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)
G [auth D]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G [auth D]	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E [auth C], G [auth D]	p70	-	-	virion component
B [auth E], D [auth F], F [auth G], H	p70	-	-	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E [auth C], G [auth D]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR005313	Peptidase N2	Family
B [auth E], D [auth F], F [auth G], H	IPR029053	Viral coat protein subunit	Homologous Superfamily
B [auth E], D [auth F], F [auth G], H	IPR005313	Peptidase N2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.