2F0A | pdb_00002f0a

Crystal Structure of Monomeric Uncomplexed form of Xenopus dishevelled PDZ domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2f0ad2	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	Segment polarity protein dishevelled homolog Dvl-2	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)
D	d2f0ad3	Artifacts	Tags	Tags	Tags	C-terminal Tags	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)
C	d2f0ac_	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	Segment polarity protein dishevelled homolog Dvl-2	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)
B	d2f0ab2	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	Segment polarity protein dishevelled homolog Dvl-2	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)
B	d2f0ab3	Artifacts	Tags	Tags	Tags	C-terminal Tags	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)
A	d2f0aa2	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	Segment polarity protein dishevelled homolog Dvl-2	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)
A	d2f0aa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	African clawed frog (Xenopus laevis ) [TaxId: 8355 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	PDZ domain-like	8040385	3000388	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PDZ domain-like	8040385	3000388	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PDZ domain-like	8040385	3000388	SCOP2B (2022-06-29)
A	SCOP2 Family	PDZ domain	8028006	4001790	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PDZ domain-like	8040385	3000388	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PDZ	e2f0aD1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
C	PDZ	e2f0aC1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
B	PDZ	e2f0aB1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
A	PDZ	e2f0aA1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
C	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
B	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Segment polarity protein dishevelled homolog DVL-2	protein binding binding signaling receptor binding G protein-coupled receptor binding frizzled binding syndecan binding proteoglycan binding carbohydrate derivative binding ephrin receptor binding identical protein binding	developmental process multicellular organism development multicellular organismal process dorsal/ventral pattern formation dorsal/ventral axis specification anatomical structure development pattern specification process axis specification regionalization regulation of protein stability biological regulation regulation of biological quality protein stabilization anatomical structure morphogenesis developmental process multicellular organism development multicellular organismal process dorsal/ventral pattern formation dorsal/ventral axis specification anatomical structure development pattern specification process axis specification regionalization regulation of protein stability biological regulation regulation of biological quality protein stabilization anatomical structure morphogenesis gastrulation with mouth forming second embryonic morphogenesis embryo development gastrulation neurogenesis cellular developmental process cell differentiation cellular process nervous system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway cell communication signal transduction Wnt signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly anterior/posterior axis specification anterior/posterior pattern specification embryonic epithelial tube formation chordate embryonic development tube formation epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching epithelial tube morphogenesis morphogenesis of embryonic epithelium epithelium development neural tube development tube development morphogenesis of an epithelium tissue development tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure convergent extension establishment or maintenance of cell polarity convergent extension involved in gastrulation activation of GTPase activity positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity intracellular signal transduction digestive system development hindgut morphogenesis digestive tract development digestive tract morphogenesis hindgut development embryonic hindgut morphogenesis positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process microtubule organizing center organization microtubule cytoskeleton organization ciliary basal body organization microtubule-based process cytoskeleton organization establishment of planar polarity establishment of tissue polarity morphogenesis of a polarized epithelium	cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm cell surface cytosol plasma membrane membrane membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle intracellular vesicle cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm cell surface cytosol plasma membrane membrane membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle intracellular vesicle intracellular membrane-bounded organelle vesicle ciliary rootlet intracellular membraneless organelle cilium plasma membrane bounded cell projection cell projection cytoskeleton membraneless organelle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003351	Dishevelled protein domain	Domain
A, B, C, D	IPR000591	DEP domain	Domain
A, B, C, D	IPR008339	Dishevelled family	Family
A, B, C, D	IPR008341	Dishevelled-2	Family
A, B, C, D	IPR024580	Dishevelled C-terminal	Domain
A, B, C, D	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR001158	DIX domain	Domain
A, B, C, D	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR036034	PDZ superfamily	Homologous Superfamily
A, B, C, D	IPR015506	Dishevelled-related protein	Family
A, B, C, D	IPR001478	PDZ domain	Domain
A, B, C, D	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR038207	DIX domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.