2HD3 | pdb_00002hd3

Crystal Structure of the Ethanolamine Utilization Protein EutN from Escherichia coli, NESG Target ER316

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d2hd3l2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
L	d2hd3l3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
K	d2hd3k_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
J	d2hd3j2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
J	d2hd3j3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
I	d2hd3i2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
I	d2hd3i3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
H	d2hd3h2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
H	d2hd3h3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
G	d2hd3g2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
G	d2hd3g3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
F	d2hd3f_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
E	d2hd3e2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
E	d2hd3e3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
D	d2hd3d2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
D	d2hd3d3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
C	d2hd3c2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
C	d2hd3c3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
B	d2hd3b2	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
B	d2hd3b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
A	d2hd3a1	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Ethanolamine utilization protein EutN	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)
A	d2hd3a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli CFT073 ) [TaxId: 199310 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2B (2022-06-29)
A	SCOP2 Family	EutN/CcmL-like	8021811	4001780	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	EutN/CcmL-like	8034191	3000362	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	EutN_CcmL	e2hd3L1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
K	EutN_CcmL	e2hd3K1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
J	EutN_CcmL	e2hd3J1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
I	EutN_CcmL	e2hd3I1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
H	EutN_CcmL	e2hd3H1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
G	EutN_CcmL	e2hd3G1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
F	EutN_CcmL	e2hd3F1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
E	EutN_CcmL	e2hd3E1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
D	EutN_CcmL	e2hd3D1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
C	EutN_CcmL	e2hd3C1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
B	EutN_CcmL	e2hd3B1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
A	EutN_CcmL	e2hd3A1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
K	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
J	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
I	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
H	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
G	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
F	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
E	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
D	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
C	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
B	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
A	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF03319	Ethanolamine utilisation protein EutN/carboxysome (EutN_CcmL)	Ethanolamine utilisation protein EutN/carboxysome	The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a ...	The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the center. this suggests that EutN forms a pore, with an opening of 26 Angstrom in diameter on one face and 14 Angstrom on the other face [2]. EutN is involved in the cobalamin-dependent degradation of ethanolamine [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Ethanolamine utilization protein eutN	-	ethanolamine catabolic process catabolic process alcohol catabolic process primary alcohol catabolic process alcohol metabolic process biogenic amine catabolic process amine metabolic process primary amino compound catabolic process ethanolamine metabolic process metabolic process cellular process small molecule metabolic process small molecule catabolic process amine catabolic process ethanolamine catabolic process catabolic process alcohol catabolic process primary alcohol catabolic process alcohol metabolic process biogenic amine catabolic process amine metabolic process primary amino compound catabolic process ethanolamine metabolic process metabolic process cellular process small molecule metabolic process small molecule catabolic process amine catabolic process primary alcohol metabolic process	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004992	Ethanolamine utilization protein EutN/carboxysome shell vertex protein CcmL	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036677	EutN/Ccml superfamily	Homologous Superfamily