2IJR | pdb_00002ijr

Crystal structure of a protein api92 from Yersinia pseudotuberculosis, Pfam DUF1281


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2ijra1 Multi-domain proteins (alpha and beta) Api92-like Api92-like Api92-like Hypothetical protein api92 (Yersinia pseudotuberculosis ) [TaxId: 633 ], SCOPe (2.08)
Ad2ijra2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pseudotuberculosis ) [TaxId: 633 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyApi92-like 8022154 4002675 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyApi92-like 8034534 3001588 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUF1281e2ijrA1 A: alpha arraysX: helical domain in Api92-like proteins (From Topology)H: helical domain in Api92-like proteins (From Topology)T: helical domain in Api92-like proteinsF: DUF1281ECOD (1.6)
ADUF1281_1e2ijrA2 A: a+b two layersX: Alpha-beta plaitsH: ferredoxin-like domain in Api92-like proteins (From Topology)T: ferredoxin-like domain in Api92-like proteinsF: DUF1281_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.1270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Api92-like domainsCATH (4.3.0)
A1.10.3530.10 Mainly Alpha Orthogonal Bundle Api92-like Api92-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06924Protein of unknown function (DUF1281) (DUF1281)Protein of unknown function (DUF1281)This entry describes a domain of unkown function found generally at the N-terminal of YubA and YubB in enterobacteriaceae. This domain is mostly found in Escherichia coli, Salmonella typhimurium and Shigella species. YubA and YubB have not been fully ...This entry describes a domain of unkown function found generally at the N-terminal of YubA and YubB in enterobacteriaceae. This domain is mostly found in Escherichia coli, Salmonella typhimurium and Shigella species. YubA and YubB have not been fully functionally characterised. YubB was identified as undecaprenyl diphosphate phosphatase (UPPP) due to its association with cell wall synthesis and bacitracin resistance when disrupted. YubA was inferred to be a transporter, possibly related to cell wall synthesis, based on its predicted membrane protein structure and its genomic association with the UPPP gene. These experiments were done using transposon mutagenesis [1].
Domain
PF18406Ferredoxin-like domain in Api92-like protein (DUF1281_C)Ferredoxin-like domain in Api92-like proteinThis domain has a ferredoxin like fold. It is often found to the C terminus of Pfam:PF06924. Domain

InterPro: Protein Family Classification InterPro Database Homepage