2QW7 | pdb_00002qw7

Carboxysome Subunit, CcmL

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d2qw7j_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
I	d2qw7i_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
H	d2qw7h_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
G	d2qw7g_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
F	d2qw7f_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
E	d2qw7e_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
D	d2qw7d_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
C	d2qw7c_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
B	d2qw7b_	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
A	d2qw7a1	All beta proteins	OB-fold	EutN/CcmL-like	EutN/CcmL-like	Carbon dioxide concentrating mechanism protein CcmL	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2B (2022-06-29)
A	SCOP2 Family	EutN/CcmL-like	8024050	4001780	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	EutN/CcmL-like	8036429	3000362	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	EutN_CcmL	e2qw7J1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
I	EutN_CcmL	e2qw7I1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
H	EutN_CcmL	e2qw7H1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
G	EutN_CcmL	e2qw7G1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
F	EutN_CcmL	e2qw7F1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
E	EutN_CcmL	e2qw7E1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
D	EutN_CcmL	e2qw7D1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
C	EutN_CcmL	e2qw7C1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
B	EutN_CcmL	e2qw7B1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)
A	EutN_CcmL	e2qw7A1	A: beta barrels	X: OB-fold	H: EutN/CcmL-like (From Topology)	T: EutN/CcmL-like	F: EutN_CcmL	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
I	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
H	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
G	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
F	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
E	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
D	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
C	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
B	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)
A	2.40.50.220	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	EutN/Ccml	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF03319	Ethanolamine utilisation protein EutN/carboxysome (EutN_CcmL)	Ethanolamine utilisation protein EutN/carboxysome	The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a ...	The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the center. this suggests that EutN forms a pore, with an opening of 26 Angstrom in diameter on one face and 14 Angstrom on the other face [2]. EutN is involved in the cobalamin-dependent degradation of ethanolamine [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Carbon dioxide concentrating mechanism protein ccmL	structural molecule activity structural constituent of carboxysome shell	photosynthesis metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR004992	Ethanolamine utilization protein EutN/carboxysome shell vertex protein CcmL	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR046387	Carboxysome shell vertex protein CcmL	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036677	EutN/Ccml superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.