2V18 | pdb_00002v18

Crystal structure of the T. thermophilus dodecin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2v18b_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
C	d2v18c_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
D	d2v18d_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
E	d2v18e_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
F	d2v18f_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
J	d2v18j_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
L	d2v18l_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
K	d2v18k_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
I	d2v18i_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
H	d2v18h_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
G	d2v18g_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d2v18a_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	Dodecin-like	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Dodecin-like	8033704	3000608	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Dodecin	e2v18B1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
C	Dodecin	e2v18C1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
D	Dodecin	e2v18D1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
E	Dodecin	e2v18E1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
F	Dodecin	e2v18F1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
J	Dodecin	e2v18J1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
L	Dodecin	e2v18L1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
K	Dodecin	e2v18K1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
I	Dodecin	e2v18I1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
H	Dodecin	e2v18H1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
G	Dodecin	e2v18G1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)
A	Dodecin	e2v18A1	A: a+b two layers	X: Dodecin subunit-like	H: Flavin-binding protein dodecin-like (From Topology)	T: Flavin-binding protein dodecin-like	F: Dodecin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
C	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
D	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
E	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
F	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
J	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
L	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
K	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
I	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
H	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
G	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
A	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07311	Dodecin (Dodecin)	Dodecin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	DODECIN	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036694	Dodecin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009923	Dodecin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025543	Dodecin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050049	Dodecin, bacteria	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.