2VDY | pdb_00002vdy

Crystal structure of the reactive loop cleaved Corticosteroid Binding Globulin complexed with Cortisol

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2vdya_	Multi-domain proteins (alpha and beta)	Serpins	Serpins	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2vdyb_	Multi-domain proteins (alpha and beta)	Serpins	Serpins	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Serpins	8070153	3001563	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Serpins	8070153	3001563	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Serpin	e2vdyA1	A: a+b complex topology	X: Serpins (From Topology)	H: Serpins (From Topology)	T: Serpins	F: Serpin	ECOD (1.6)
B	Serpin	e2vdyB1	A: a+b complex topology	X: Serpins (From Topology)	H: Serpins (From Topology)	T: Serpins	F: Serpin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.497.10	Alpha Beta	2-Layer Sandwich	Antithrombin	Chain I, domain 2	CATH (4.3.0)
A	2.30.39.10	Mainly Beta	Roll	Alpha-1-antitrypsin	domain 1	CATH (4.3.0)
B	3.30.497.10	Alpha Beta	2-Layer Sandwich	Antithrombin	Chain I, domain 2	CATH (4.3.0)
B	2.30.39.10	Mainly Beta	Roll	Alpha-1-antitrypsin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00079	Serpin (serine protease inhibitor) (Serpin)	Serpin (serine protease inhibitor)	Structure is a multi-domain fold containing a bundle of helices and a beta sandwich.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	CORTICOSTEROID-BINDING GLOBULIN	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity molecular carrier activity binding steroid binding lipid binding	steroid metabolic process lipid biosynthetic process primary metabolic process glucocorticoid metabolic process glucocorticoid biosynthetic process biosynthetic process metabolic process cellular process steroid biosynthetic process steroid hormone biosynthetic process lipid metabolic process	cellular anatomical structure extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023795	Serpin, conserved site	Conserved Site
A, B	IPR000215	Serpin family	Family
A, B	IPR023796	Serpin domain	Domain
A, B	IPR042178	Serpin superfamily, domain 1	Homologous Superfamily
A, B	IPR042185	Serpin superfamily, domain 2	Homologous Superfamily
A, B	IPR036186	Serpin superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P08185	corticosteroid-binding globulin deficiency autoimmune disease cirrhosis of liver Liver Cirrhosis, Experimental dermatitis herpetiformis hemorrhoid ulcerative colitis miliary tuberculosis Diamond-Blackfan anemia rosacea bacterial conjunctivitis musculoskeletal system disease seborrheic dermatitis pancreatic ductal adenocarcinoma hypopituitarism corticosteroid-binding globulin deficiency autoimmune disease cirrhosis of liver Liver Cirrhosis, Experimental dermatitis herpetiformis hemorrhoid ulcerative colitis miliary tuberculosis Diamond-Blackfan anemia rosacea bacterial conjunctivitis musculoskeletal system disease seborrheic dermatitis pancreatic ductal adenocarcinoma hypopituitarism pemphigus skin disease polymyalgia rheumatica epicondylitis Addison disease Stevens-Johnson syndrome inherited aplastic anemia postmenopausal osteoporosis allergic bronchopulmonary aspergillosis synovitis iritis contact dermatitis extrinsic allergic alveolitis systemic lupus erythematosus keratitis corneal ulcer fatty liver disease ankylosing spondylitis tenosynovitis psoriasis gallbladder disease asthma tinea pedis pulmonary fibrosis granuloma annulare dermatophytosis of groin and perianal area rheumatic heart disease autoimmune hemolytic anemia uveitis sarcoidosis mycosis fungoides drug-induced liver injury blepharoconjunctivitis pancreatic intraductal papillary-mucinous carcinoma endogenous depression idiopathic acute eosinophilic pneumonia cerebrovascular disorder endometriosis acquired thrombocytopenia inflammatory bowel disease erythema multiforme adrenocortical insufficiency allergic rhinitis eye disease temporal arteritis Klinefelter syndrome aphthous stomatitis thyroiditis Crohn disease dacryocystitis psoriatic arthritis atopic conjunctivitis depressive disorder heart disease autism spectrum disorder trichinosis rheumatoid arthritis autoimmune thrombocytopenic purpura multiple sclerosis Hodgkins lymphoma nephrotic syndrome hypogonadotropic hypogonadism bursitis otitis externa pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia endometrial carcinoma Sjogren syndrome pneumocystosis eosinophilic pneumonia acute lymphoblastic leukemia chronic beryllium disease alcoholic liver cirrhosis sympathetic ophthalmia iridocyclitis congenital adrenal hyperplasia primary cutaneous T-cell lymphoma exanthem juvenile idiopathic arthritis proctitis angioedema tendinitis aspiration pneumonitis tinea corporis cryptorchidism pulmonary eosinophilia gout atopic eczema

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.