2YKD | pdb_00002ykd

Structure of the matrix protein from human respiratory syncytial virus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyEV matrix protein-like 8092058 3000219 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyEV matrix protein-like 8092060 3000219 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APneumo_matrix_Ce2ykdA2 A: beta barrelsX: EV matrix protein (From Homology)H: EV matrix proteinT: EV matrix proteinF: Pneumo_matrix_CECOD (1.6)
APneumo_matrix_Ne2ykdA1 A: beta barrelsX: EV matrix protein (From Homology)H: EV matrix proteinT: EV matrix proteinF: Pneumo_matrix_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.70.20.30 Mainly Beta Distorted Sandwich Topoisomerase I domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03393Pneumovirus matrix protein N-terminal domain (Matrix_Pneumo_N)Pneumovirus matrix protein N-terminal domainThis entry represents the N-terminal domain of the pneumoviral matrix protein. The N-terminal domain of the RSV M protein (residues 1-126) adopts a twisted beta-sandwich fold comprised of two nearly perpendicular beta-sheets - one with 3 strands and ...This entry represents the N-terminal domain of the pneumoviral matrix protein. The N-terminal domain of the RSV M protein (residues 1-126) adopts a twisted beta-sandwich fold comprised of two nearly perpendicular beta-sheets - one with 3 strands and one with 4 strands [1]. The overall topology is a curved horseshoe-like arrangement with the 3-stranded beta-sheet forming the concave inner face flanked by loop regions, and the 4-stranded beta-sheet forming the convex outer face. This domain is loosely associated with the C-terminal domain via weak hydrophobic interactions. The N-terminal domain contains a distinctive negatively charged surface lobe that may direct interactions with binding partners. Sequence alignments indicate that regions of diversity between RSV and other pneumoviruses map to external loop regions and sheet edges in this domain, likely mediating species-specific protein or RNA interactions.
Domain