2YPW | pdb_00002ypw

Atomic model for the N-terminus of TraO fitted in the full-length structure of the bacterial pKM101 type IV secretion system core complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	CagX_N	e2ypwN1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
M	CagX_N	e2ypwM1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
L	CagX_N	e2ypwL1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
K	CagX_N	e2ypwK1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
J	CagX_N	e2ypwJ1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
I	CagX_N	e2ypwI1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
H	CagX_N	e2ypwH1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
G	CagX_N	e2ypwG1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
F	CagX_N	e2ypwF1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
E	CagX_N	e2ypwE1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
D	CagX_N	e2ypwD1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
C	CagX_N	e2ypwC1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
B	CagX_N	e2ypwB1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
A	CagX_N	e2ypwA1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PF03524	Conjugal transfer protein (CagX)	Conjugal transfer protein	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR010258	Conjugal transfer, TrbG/VirB9/CagX	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.