3FID | pdb_00003fid

LpxR from Salmonella typhimurium

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	LpxR-like	8092363	3002597	SCOP2B (2022-06-29)
A	SCOP2 Family	LpxR-like	8045903	4004754	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LpxR-like	8092363	3002597	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF2219	e3fidB1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Lipid A deacylase LpxR (From Topology)	T: Lipid A deacylase LpxR	F: DUF2219	ECOD (1.6)
A	DUF2219	e3fidA1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Lipid A deacylase LpxR (From Topology)	T: Lipid A deacylase LpxR	F: DUF2219	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.128.140	Mainly Beta	Beta Barrel	Lipocalin	Outer membrane protein	CATH (4.3.0)
A	2.40.128.140	Mainly Beta	Beta Barrel	Lipocalin	Outer membrane protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09982	Outer membrane protein LpxR (LpxR)	Outer membrane protein LpxR	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative outer membrane protein (LpxR)	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR018707	Lipid A deacylase LpxR	Family
A, B	IPR037107	Putative outer membrane protein superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Beta-barrel transmembrane	Lipid A deacylase (n=12, S=14)	Lipid A deacylase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Beta-Barrel Membrane Proteins: Monomeric/Dimeric	LpxR lipid A deacylase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.