3MX4 | pdb_00003mx4

DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGIY-YIG endonuclease 8054053 3000597 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HRE_Eco29kIe3mx4H1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
GRE_Eco29kIe3mx4G1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
FRE_Eco29kIe3mx4F1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
ERE_Eco29kIe3mx4E1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
DRE_Eco29kIe3mx4D1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
CRE_Eco29kIe3mx4C1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
BRE_Eco29kIe3mx4B1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)
ARE_Eco29kIe3mx4A1 A: a+b three layersX: GIY-YIG endonuclease (From Topology)H: GIY-YIG endonuclease (From Topology)T: GIY-YIG endonucleaseF: RE_Eco29kIECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF09517Eco29kI restriction endonuclease (RE_Eco29kI)Eco29kI restriction endonuclease- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J, L, N, P
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3')---
I, K, M, O
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3')---
A, B, C, D, E
Eco29kIR - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR018575Restriction endonuclease, type II, Eco29kIFamily