3PJV | pdb_00003pjv

Structure of Pseudomonas fluorescence LapD periplasmic domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth F]	SCOP2 Family	LapD output domain-like	8045600	4004560	SCOP2 (2022-06-29)
B [auth F]	SCOP2 Superfamily	Sensory domain-like	8053816	3001802	SCOP2 (2022-06-29)
A [auth D]	SCOP2B Superfamily	Sensory domain-like	8053816	3001802	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth F]	LapD_MoxY_N	e3pjvF1	A: a+b three layers	X: Profilin-like	H: LapD periplasmic domain (From Topology)	T: LapD periplasmic domain	F: LapD_MoxY_N	ECOD (1.6)
A [auth D]	LapD_MoxY_N	e3pjvD1	A: a+b three layers	X: Profilin-like	H: LapD periplasmic domain (From Topology)	T: LapD periplasmic domain	F: LapD_MoxY_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth F]	3.30.110.200	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3		CATH (4.3.0)
B [auth F]	6.20.270.20	Special	Other non-globular	Carboxypeptidase Inhibitor	Chain A	CATH (4.3.0)
A [auth D]	3.30.110.200	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3		CATH (4.3.0)
A [auth D]	6.20.270.20	Special	Other non-globular	Carboxypeptidase Inhibitor	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D], B [auth F]	PF16448	LapD/MoxY periplasmic domain (LapD_MoxY_N)	LapD/MoxY periplasmic domain	This domain is the N-terminal periplasmic domain of the LapD and MoxY receptor proteins [1-2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], B [auth F]	Cyclic dimeric GMP binding protein	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity cyclic-guanylate-specific phosphodiesterase activity hydrolase activity catalytic activity identical protein binding protein binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth F]	IPR000160	GGDEF domain	Domain
A [auth D], B [auth F]	IPR003660	HAMP domain	Domain
A [auth D], B [auth F]	IPR032244	LapD/MoxY, periplasmic domain	Domain
A [auth D], B [auth F]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A [auth D], B [auth F]	IPR050706	Cyclic di-GMP phosphodiesterase-like	Family
A [auth D], B [auth F]	IPR042461	LapD/MoxY periplasmic domain, C-terminal	Homologous Superfamily
A [auth D], B [auth F]	IPR001633	EAL domain	Domain
A [auth D], B [auth F]	IPR035919	EAL domain superfamily	Homologous Superfamily
A [auth D], B [auth F]	IPR029787	Nucleotide cyclase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth D], B [auth F]	OPM	Transmembrane	Alpha-helical polytopic	Transmembrane protein containing HAMP domain	Transmembrane protein containing HAMP domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.