3T24 | pdb_00003t24

Crystal structure of Pseudomonas aeruginosa OpdQ

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3t24a1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccK-like (OprK-like)	OpdQ porin (OccK6)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
A	d3t24a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
B	d3t24b_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccK-like (OprK-like)	OpdQ porin (OccK6)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
C	d3t24c_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccK-like (OprK-like)	OpdQ porin (OccK6)	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3t24A1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: I-set	F:	ECOD (20:10:01)
B		e3t24B2	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Fer4_13	F:	ECOD (20:10:01)
C		e3t24C2	A: DEATH domain	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Fer4_13	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
B	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
C	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF03573	outer membrane porin, OprD family (OprD)	outer membrane porin, OprD family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	porin	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity	response to nitrate response to stimulus response to chemical response to oxygen-containing compound response to nitrogen compound cellular response to stimulus cellular response to chemical stimulus cellular response to oxygen levels response to oxygen levels response to abiotic stimulus cellular process	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B, C	IPR005318	Outer membrane porin, bacterial	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.