3VPJ | pdb_00003vpj

crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa in complex with immune protein Tsi1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CHAP	e3vpjA2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: CHAP	ECOD (1.6)
B	CHAP	e3vpjB2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: CHAP	ECOD (1.6)
E [auth C]	CHAP	e3vpjC2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: CHAP	ECOD (1.6)
F [auth D]	CHAP	e3vpjD2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: CHAP	ECOD (1.6)
C [auth E]	EUF08404	e3vpjE1	A: a+b two layers	X: IF3-like	H: SirA-like (From Topology)	T: SirA-like	F: EUF08404	ECOD (1.6)
D [auth F]	EUF08404	e3vpjF2	A: a+b two layers	X: IF3-like	H: SirA-like (From Topology)	T: SirA-like	F: EUF08404	ECOD (1.6)
G	EUF08404	e3vpjG2	A: a+b two layers	X: IF3-like	H: SirA-like (From Topology)	T: SirA-like	F: EUF08404	ECOD (1.6)
H	EUF08404	e3vpjH2	A: a+b two layers	X: IF3-like	H: SirA-like (From Topology)	T: SirA-like	F: EUF08404	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (4.3.0)
B	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (4.3.0)
E [auth C]	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (4.3.0)
F [auth D]	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (4.3.0)
C [auth E]	2.40.128.650	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
D [auth F]	2.40.128.650	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
G	2.40.128.650	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
H	2.40.128.650	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth E], D [auth F], G, H	PF21565	Immune protein Tsi1 (Tsi1)	Immune protein Tsi1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E [auth C], F [auth D]	type VI secretion exported 1	amidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	host cellular component cellular anatomical structure host cell part host cell membrane other organism part membrane extracellular region
C [auth E], D [auth F], G, H	Tse1-specific immunity protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth C], F [auth D]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
C [auth E], D [auth F], G, H	IPR049346	Immune protein Tsi1-like superfamily	Homologous Superfamily
C [auth E], D [auth F], G, H	IPR049345	Immune protein Tsi1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.