3ZBI | pdb_00003zbi

Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CagX-like	8052803	3002142	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TrbI-like	8052800	3002141	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	MPP_Prp_like_like	e3zbiX1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
U	MPP_Prp_like_like	e3zbiU1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
R	MPP_Prp_like_like	e3zbiR1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
PA [auth p]	MPP_Prp_like_like	e3zbip1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
O	MPP_Prp_like_like	e3zbiO1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
MA [auth m]	MPP_Prp_like_like	e3zbim1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
L	MPP_Prp_like_like	e3zbiL1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
JA [auth j]	MPP_Prp_like_like	e3zbij1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
I	MPP_Prp_like_like	e3zbiI1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
GA [auth g]	MPP_Prp_like_like	e3zbig1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
F	MPP_Prp_like_like	e3zbiF1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
DA [auth d]	MPP_Prp_like_like	e3zbid1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
C	MPP_Prp_like_like	e3zbiC1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
AA [auth a]	MPP_Prp_like_like	e3zbia1	A: extended segments	X: TraN protein (From Topology)	H: TraN protein (From Topology)	T: TraN protein	F: MPP_Prp_like_like	ECOD (1.6)
Z	CagX_C	e3zbiZ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
W	CagX_C	e3zbiW1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
T	CagX_C	e3zbiT1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
Q	CagX_C	e3zbiQ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
OA [auth o]	CagX_C	e3zbio1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
N	CagX_C	e3zbiN1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
LA [auth l]	CagX_C	e3zbil1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
K	CagX_C	e3zbiK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
IA [auth i]	CagX_C	e3zbii1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
H	CagX_C	e3zbiH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
FA [auth f]	CagX_C	e3zbif1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
E	CagX_C	e3zbiE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
CA [auth c]	CagX_C	e3zbic1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
B	CagX_C	e3zbiB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
Y	TrbI	e3zbiY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
V	TrbI	e3zbiV1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
S	TrbI	e3zbiS1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
P	TrbI	e3zbiP1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
NA [auth n]	TrbI	e3zbin1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
M	TrbI	e3zbiM1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
KA [auth k]	TrbI	e3zbik1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
J	TrbI	e3zbiJ2	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
HA [auth h]	TrbI	e3zbih1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
G	TrbI	e3zbiG2	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
EA [auth e]	TrbI	e3zbie2	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
D	TrbI	e3zbiD1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
BA [auth b]	TrbI	e3zbib2	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
A	TrbI	e3zbiA1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	PF03524	Conjugal transfer protein (CagX)	Conjugal transfer protein	-	Family
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth a], C, DA [auth d], F, GA [auth g], AA [auth a], C, DA [auth d], F, GA [auth g], I, JA [auth j], L, MA [auth m], O, PA [auth p], R, U, X	TRAN PROTEIN	-	-	-
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	TRAO PROTEIN	-	-	-
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	TRAF PROTEIN	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a], C, DA [auth d], F, GA [auth g], AA [auth a], C, DA [auth d], F, GA [auth g], I, JA [auth j], L, MA [auth m], O, PA [auth p], R, U, X	IPR049533	TraN-like	Family
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
B, CA [auth c], E, FA [auth f], H, B, CA [auth c], E, FA [auth f], H, IA [auth i], K, LA [auth l], N, OA [auth o], Q, T, W, Z	IPR010258	Conjugal transfer, TrbG/VirB9/CagX	Family
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	IPR047695	Type IV secretion system, VirB10/PtlG	Family
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
A, BA [auth b], D, EA [auth e], G, A, BA [auth b], D, EA [auth e], G, HA [auth h], J, KA [auth k], M, NA [auth n], P, S, V, Y	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family